PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00096909001
Common NameGSBRNA2T00096909001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 230aa    MW: 25422.2 Da    PI: 4.0629
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00096909001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.91.3e-131351139
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                         k+i nk  r +tfskRr g+  KA  L+vL da++a++ 
  GSBRNA2T00096909001 13 KKITNKASRATTFSKRRDGLYSKAAQLCVLSDAQIAILA 51
                         689*********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.273556IPR002100Transcription factor, MADS-box
SMARTSM004322.8E-15566IPR002100Transcription factor, MADS-box
CDDcd002667.22E-20686No hitNo description
PRINTSPR004041.0E-9727IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-17780IPR002100Transcription factor, MADS-box
PfamPF003191.5E-131455IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-92742IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-94263IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MVKGGTKRKP EMKKITNKAS RATTFSKRRD GLYSKAAQLC VLSDAQIAIL ATPSSSSNSN  60
ASFFSFGHSS VESVVSAYLA GQRLPPVSSS RFWWDDDKLA NSKNPEELME AMESMKVLMS  120
HLKGLEDQTL STVDQSPDLD EWSEMELTQL LQDCDDVPPP PPLVSNTDKE EEDQTVSDNN  180
NNNSVSSLPA AAEKSLEEVT MDLDFDTIFE GLLSYDDEDL FWSDDLLFM*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00096909001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013588961.11e-135PREDICTED: agamous-like MADS-box protein AGL97
SwissprotQ9C6338e-45AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBLA0A078IHR31e-166A0A078IHR3_BRANA; BnaC01g44480D protein
STRINGBo6g014350.11e-134(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46408.13e-34AGAMOUS-like 97
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]