PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00097134001
Common NameGSBRNA2T00097134001, LOC106445966
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 316aa    MW: 35735 Da    PI: 6.3885
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00097134001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.52.9e-35201122103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          F+ k+y++++d++++ li+w    nsf+v d+ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+k
  GSBRNA2T00097134001  20 FVAKTYQMVNDPSTDWLITWGPAHNSFIVADPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEHFLRGQK 100
                          9********************999*****************************************999.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          +ll++i r+k++
  GSBRNA2T00097134001 101 HLLKNIARRKHA 112
                          *********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.1E-5516109IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.3E-3717109IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.5E-3317109IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.4E-3020109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-182043IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-185870IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405983IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-187183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MEDDKNNNTS STNTNVIAPF VAKTYQMVND PSTDWLITWG PAHNSFIVAD PLDFSQRILP  60
AYFKHNNFSS FVRQLNTYGF RKVDPDRWEF ANEHFLRGQK HLLKNIARRK HARGMTDAED  120
GEIVKEIERL RDEQRELELE IQRMNQRIEA TEKRPEQMMA FLYKVADDPD FLPRMMLEKE  180
RTKQLVSDKK KRRVTVKSEE GAEEEERVFG VVSPSPSPSP ENSIGWVVPM QRQGTFGSYY  240
NETGMVTNSM ISTSSKSSSL TSTLSLLESV NRGGGGGCGS IQGETRDKEA ATFGGVVESN  300
PQTPPYPFSL FRGGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-251710926129Heat shock factor protein 1
5d5v_B1e-251710926129Heat shock factor protein 1
5d5v_D1e-251710926129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188192KKKRR
2188193KKKRRV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.117901e-95seed
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00097134001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013743084.10.0heat stress transcription factor C-1
RefseqXP_022555386.10.0heat stress transcription factor C-1-like
SwissprotQ9LV521e-144HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A078INH40.0A0A078INH4_BRANA; BnaC03g43990D protein
STRINGBo3g083520.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67752743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.11e-128heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]