PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00097198001
Common NameGSBRNA2T00097198001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 228aa    MW: 25493.6 Da    PI: 8.6173
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00097198001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.5e-1952103156
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                          s y+G+r+++ +grW+AeIrdp     +  r++lg+f tae+Aa+a++  +k+++g+
  GSBRNA2T00097198001  52 SEYRGIRRRP-WGRWAAEIRDPI----KgVRVWLGTFNTAEDAARAYDLEAKRIRGA 103
                          569*******.**********72....46*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.09E-2252111IPR016177DNA-binding domain
PfamPF008472.5E-1253102IPR001471AP2/ERF domain
SMARTSM003801.0E-3653116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-3153111IPR001471AP2/ERF domain
PROSITE profilePS5103223.97353110IPR001471AP2/ERF domain
PRINTSPR003672.4E-115465IPR001471AP2/ERF domain
CDDcd000186.20E-3154111No hitNo description
PRINTSPR003672.4E-117692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MCGGAVIADY ITPSRSRRSS KSTWRRDDVP AAPLRRSSPP QEDRRKKKKK SSEYRGIRRR  60
PWGRWAAEIR DPIKGVRVWL GTFNTAEDAA RAYDLEAKRI RGAKAKLNFP NESPSRKRKA  120
SSSSSSSSPQ PQVKIEEKQE VAVASSMWEG DTIQVDTQWL EDAIKGGEEE GKKQKGCDGE  180
ADVNALLSEE LLAFEKETEC FFQMPFMEGG NCVSSVFEGD DVLDLWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2250110263ATERF1
3gcc_A2e-2250110263ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14248DRRKKKK
24349RRKKKKK
34359RRKKKKKSSEYRGIRRR
44560KKKKKSSEYRGIRRRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.231150.0root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00097198001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895750.0AC189575.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011C10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590358.11e-132PREDICTED: ethylene-responsive transcription factor ERF073-like
SwissprotQ8H0T53e-62ERF73_ARATH; Ethylene-responsive transcription factor ERF073
TrEMBLA0A078INJ41e-164A0A078INJ4_BRANA; BnaC06g24360D protein
STRINGBo6g091540.11e-131(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137371625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.31e-58ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Yang CY,Huang YC,Ou SL
    ERF73/HRE1 is involved in H2O2 production via hypoxia-inducible Rboh gene expression in hypoxia signaling.
    Protoplasma, 2017. 254(4): p. 1705-1714
    [PMID:27995331]