PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00097284001
Common NameGSBRNA2T00076094001, GSBRNA2T00097284001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 62aa    MW: 6363.3 Da    PI: 4.6362
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00097284001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS66.45.8e-21157319374
                 GRAS 319 leeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                          ++++GF pvpl+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaW+
  GSBRNA2T00097284001   1 MGSVGFDPVPLGSSAFKQASMLLSVFAgGDGYRVEENDGCLMLGWQTRPLIATSAWK 57 
                          7899****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035141.9E-18157IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:1903506Biological Processregulation of nucleic acid-templated transcription
Sequence ? help Back to Top
Protein Sequence    Length: 62 aa     Download sequence    Send to blast
MGSVGFDPVP LGSSAFKQAS MLLSVFAGGD GYRVEENDGC LMLGWQTRPL IATSAWKLAG  60
A*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in both vegetative and reproductive tissues. {ECO:0000269|PubMed:15347801}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269|PubMed:15347801}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00097284001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130367.13e-35PREDICTED: LOW QUALITY PROTEIN: DELLA protein RGL2
RefseqXP_013637838.13e-35PREDICTED: DELLA protein RGL2
RefseqXP_013747675.13e-35DELLA protein RGL2 isoform X3
RefseqXP_022569045.13e-35DELLA protein RGL2 isoform X1
RefseqXP_022569046.13e-35DELLA protein RGL2 isoform X2
SwissprotQ7Y1B68e-30GAI_SOLLC; DELLA protein GAI
TrEMBLA0A078I2071e-36A0A078I207_BRANA; BnaA05g32630D protein
TrEMBLA0A0D3CN138e-34A0A0D3CN13_BRAOL; Uncharacterized protein
TrEMBLA0A397ZJP97e-34A0A397ZJP9_BRACM; Uncharacterized protein
TrEMBLA0A3P5ZGI27e-34A0A3P5ZGI2_BRACM; Uncharacterized protein
TrEMBLA0A3P6FP667e-34A0A3P6FP66_BRAOL; Uncharacterized protein
STRINGBo5g149920.11e-34(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2644523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.15e-32RGA-like 2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Nir I, et al.
    The Tomato DELLA Protein PROCERA Acts in Guard Cells to Promote Stomatal Closure.
    Plant Cell, 2017. 29(12): p. 3186-3197
    [PMID:29150547]