PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00097419001
Common NameGSBRNA2T00097419001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 181aa    MW: 19025.6 Da    PI: 5.0732
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00097419001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.41.4e-161664255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          y+G+r ++ +g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++ a+++l+g
  GSBRNA2T00097419001 16 FYRGIR-CR-SGKWVSEIREPKK---TTRVWLGTYSTPEMAAAAYDVAALALKG 64
                         79***9.55.6*********854...5***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.6E-281678IPR001471AP2/ERF domain
PROSITE profilePS5103219.5851672IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-181674IPR016177DNA-binding domain
PfamPF008472.2E-91764IPR001471AP2/ERF domain
CDDcd000182.15E-171774No hitNo description
PRINTSPR003671.2E-61728IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-271774IPR001471AP2/ERF domain
PRINTSPR003671.2E-65474IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
METDAGLISR RKKHPFYRGI RCRSGKWVSE IREPKKTTRV WLGTYSTPEM AAAAYDVAAL  60
ALKGGEAVLN FPESIGSYPL PVSSSAAHIR TAAAKAAATV GAAAAAAVNA AMKGGEKKEE  120
KVCDGAGSSA VEFVDEEELL NMPGLLEDMA KGMMVAPPWM GCPPSDDSPE NSDGESLWSY  180
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1313731173Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00097419001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894370.0AC189437.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB069A23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009112987.11e-104PREDICTED: ethylene-responsive transcription factor ERF026-like
RefseqXP_013673463.11e-104ethylene-responsive transcription factor ERF026-like
SwissprotQ9CAN91e-76ERF26_ARATH; Ethylene-responsive transcription factor ERF026
TrEMBLA0A078II951e-127A0A078II95_BRANA; BnaC09g51170D protein
TrEMBLA0A0D3E3T61e-127A0A0D3E3T6_BRAOL; Uncharacterized protein
STRINGBo9g028820.11e-128(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19572777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12630.12e-50ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]