PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00097709001

Common Name

GSBRNA2T00097709001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 326aa MW: 37418 Da PI: 7.8248

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00097709001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170	7.8e-53	10	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeel+ +yL+kkv++ +++l +vi++vdiyk++PwdLp+k+ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk GSBRNA2T00097709001 10 LPPGFRFHPTDEELILHYLRKKVSSLPVPL-SVIEDVDIYKSDPWDLPAKAPFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDK 98 79**************************.99***********988899******************************** PP NAM 91 evlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 + + +e++g+kk Lvfy+g+ pkg+kt+W+mheyrl GSBRNA2T00097709001 99 LIAVPnggVNENIGIKKALVFYRGKPPKGVKTNWIMHEYRL 139 996554566**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.24E-62	7	184	IPR003441	NAC domain
PROSITE profile	PS51005	60.251	10	184	IPR003441	NAC domain
Pfam	PF02365	6.5E-28	11	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MISKDPRSSL PPGFRFHPTD EELILHYLRK KVSSLPVPLS VIEDVDIYKS DPWDLPAKAP 60 FGEKEWYFFS PRDRKYPNGA RPNRAAASGY WKATGTDKLI AVPNGGVNEN IGIKKALVFY 120 RGKPPKGVKT NWIMHEYRLA ETLSPKRVDH SSDSQFNSLG DRSLKSREYS MRLDDWVLCR 180 IYKKSHISLS PPHVATDTSN QEHEENDKEP FIVSETLLPN LENNQTLKRQ KSSFSNLLDA 240 TDLTFLTNFL NETPEHHTEQ EFSFMFENFS NPNIYGNPYL DQKLPRLSPP SSETSFIGNK 300 RERMDYAEET TSTSKKMINN FSYNI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	3e-69	9	184	19	168	NAC domain-containing protein 19
3swm_B	3e-69	9	184	19	168	NAC domain-containing protein 19
3swm_C	3e-69	9	184	19	168	NAC domain-containing protein 19
3swm_D	3e-69	9	184	19	168	NAC domain-containing protein 19
3swp_A	3e-69	9	184	19	168	NAC domain-containing protein 19
3swp_B	3e-69	9	184	19	168	NAC domain-containing protein 19
3swp_C	3e-69	9	184	19	168	NAC domain-containing protein 19
3swp_D	3e-69	9	184	19	168	NAC domain-containing protein 19
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.11284	0.0	leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000269\|PubMed:24363315}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00097709001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269\|PubMed:24363315, ECO:0000269\|PubMed:24659488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF974760	0.0	KF974760.1 Brassica napus NAC transcription factor 47-1 (NAC47-1.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009130419.2	0.0	PREDICTED: NAC domain-containing protein 18
Swissprot	Q84TD6	0.0	NAC47_ARATH; NAC transcription factor 47
TrEMBL	A0A078IIK7	0.0	A0A078IIK7_BRANA; BnaA05g37410D protein
TrEMBL	M4ET19	0.0	M4ET19_BRARP; Uncharacterized protein
STRING	Bra031949.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7723	25	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.1	0.0	NAC domain containing protein 47

Publications ? help Back to Top
Hofmann NR A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air. Plant Cell, 2013. 25(12): p. 4771 [PMID:24363314] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]