PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00097714001
Common NameGSBRNA2T00097714001, LOC106387470, LOC106435306
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 194aa    MW: 22172.5 Da    PI: 9.666
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00097714001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.83.9e-151862650
                         HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         +  r++tfskR+ g++KK +E+  LC++e + ++fs +gk y+++
  GSBRNA2T00097714001 18 YAARKITFSKRKSGLFKKMNEIVSLCNVETSFLVFSDSGKPYTFA 62
                         5679***************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.292565IPR002100Transcription factor, MADS-box
SMARTSM004322.6E-17564IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.55E-20679IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-14727IPR002100Transcription factor, MADS-box
PfamPF003191.2E-171961IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-142742IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-144263IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MRSTKGKQKI EMKKVGAYAA RKITFSKRKS GLFKKMNEIV SLCNVETSFL VFSDSGKPYT  60
FAYPSLEEAV GQFKNPLRHE PSATINTRPL VEAYKRQKNQ DLMERYMDLV EELEINNEKE  120
KILKKIIKEN KEKILWNIPP AECLSVEEKK WMRQTFVGLH VFLSDMALKC FGNDGDGSSS  180
SQESRGRDGE TYA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00097714001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130421.11e-143PREDICTED: MADS-box transcription factor 23
RefseqXP_013682785.11e-143MADS-box transcription factor 23-like
RefseqXP_013731636.11e-143MADS-box transcription factor 23
TrEMBLA0A078IN901e-141A0A078IN90_BRANA; BnaA05g37450D protein
TrEMBLA0A397ZN981e-141A0A397ZN98_BRACM; Uncharacterized protein
TrEMBLM4ET151e-141M4ET15_BRARP; Uncharacterized protein
STRINGBra031945.1-P1e-142(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.15e-45AGAMOUS-like 57
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]