PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00097923001
Common NameGSBRNA2T00097923001, LOC106381874
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 472aa    MW: 52501.1 Da    PI: 6.3618
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00097923001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.43.1e-16741135
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                         C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  GSBRNA2T00097923001  7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGS 41
                         ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.1E-9155IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.28E-11546No hitNo description
CDDcd002026.44E-16654No hitNo description
Gene3DG3DSA:3.30.50.109.3E-13740IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PfamPF003205.3E-14741IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF139193.7E-8234331IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG SLVNYTPVRA RAEGDEVEID  60
DRRGGQKMMM INGMSMNKKR KPYQENFTVK RTNLEFSNGF KKRSLEEEAS NNRSSSGSVV  120
SNSESCDQSN VWETSFAACK KRTCVGRPKA ASSSVEKLTK DLFSILQEQQ FSCCVSGISE  180
EELLFENESP MVIGHGSVLL IDPHEDSEAS SLLVENSKSS SIHSQNSGGK AIKQEQLKRT  240
KSQVLGRHSL PLCNIDLKDV INFDEFIEKF TKGEQQKLMK LLPEVDSVDP PHSLMSMFES  300
SQFKENFSLF QQLVADGVFG TSTSSSGSKL EEFKTLAKLA LSDPDKSHML ESYQMLKEQR  360
KGIEDSSRVS NQTPSDNNRL VIIERPCESL NQNFSETRVV TKSPKEVMKI RSKHIETKEI  420
IENSVSSLNH MSYGGSMVCG GYEDNDNSDQ DLLLDVPSNG SFPQAELLHM I*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00097923001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1834950.0AC183495.1 Brassica oleracea Contig A, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013677268.10.0GATA transcription factor 27 isoform X1
SwissprotQ5PP380.0GAT27_ARATH; GATA transcription factor 27
TrEMBLA0A078JXX20.0A0A078JXX2_BRANA; BnaCnng67690D protein
STRINGBo2g132210.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16062785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47140.10.0GATA transcription factor 27
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]