PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00097946001

Common Name

GSBRNA2T00097946001, LOC106444825, LOC106444826

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 285aa MW: 31799.2 Da PI: 8.5627

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00097946001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.3	8e-39	33	92	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++lkcprC+s+ntkfCyynny+lsqPr+fCk+CrryWt+GGalrnvP+Ggg+rk kks GSBRNA2T00097946001 33 DQQTLKCPRCNSSNTKFCYYNNYNLSQPRHFCKSCRRYWTRGGALRNVPIGGGCRKTKKS 92 57899***************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-31	20	91	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.6E-33	35	91	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.711	37	91	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	39	75	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MSSHTNLHSP KPDHGISGTS HTKKLPSSSS SQDQQTLKCP RCNSSNTKFC YYNNYNLSQP 60 RHFCKSCRRY WTRGGALRNV PIGGGCRKTK KSFKPNTSTP SCQRFYSSVM EDSSKFFPPP 120 TTMGFQLMNN QEVLGLRPME QAETTPVDVR SGLSLMGFGD YSNHSPATFS TAGTLATSIE 180 TLSCLNQDLH WRLQQQRMAM LFGNSNEETV VVERPQPILN RNLEIVNSPP TKKGENQTEW 240 YFGNNNDNEG VVSNNDNNNN TGGSDQWNNG IQAWTDLNHY NALP*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00097946001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189266	0.0	AC189266.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB022L12, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013741707.1	0.0	dof zinc finger protein DOF5.7-like
Refseq	XP_013741708.1	0.0	dof zinc finger protein DOF5.7-like
Swissprot	Q9LSL6	1e-154	DOF57_ARATH; Dof zinc finger protein DOF5.7
TrEMBL	A0A078JXH4	0.0	A0A078JXH4_BRANA; BnaAnng33280D protein
TrEMBL	A0A397XSB8	0.0	A0A397XSB8_BRACM; Uncharacterized protein
STRING	Bra037822.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4950	28	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65590.1	1e-140	Dof family protein

Link Out ? help Back to Top
Entrez Gene	106444825 \| 106444826

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Castorina G,Fox S,Tonelli C,Galbiati M,Conti L A novel role for STOMATAL CARPENTER 1 in stomata patterning. BMC Plant Biol., 2016. 16(1): p. 172 [PMID:27484174]