PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00097952001

Common Name

GSBRNA2T00097952001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 137aa MW: 16106.4 Da PI: 10.6667

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00097952001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.3	1.2e-11	20	79	4	63
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 + +rk +NRe++rrsR +K+++++ L+ +L +eN++L ++l +++ +e+ GSBRNA2T00097952001 20 EREKKRKKSNRESSRRSRMKKQKYLDDLRSQLNQLNTENRELGNKLRYVMHHCQGANMEN 79 456788999*************************************99999999777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.8E-9	16	70	No hit	No description
SMART	SM00338	9.4E-12	17	81	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.128	19	65	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.7E-8	21	78	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.51E-10	21	72	No hit	No description
PROSITE pattern	PS00036	0	24	39	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
MEDRPSNLTG LNVFFPTKDE REKKRKKSNR ESSRRSRMKK QKYLDDLRSQ LNQLNTENRE 60 LGNKLRYVMH HCQGANMENE RLRVENQILH EKLMSLRQAL VLRQIQQSST CATWSCVNST 120 VVTVHQNPSM LRDHVI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	22	26	KKRKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00097952001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022551348.1	2e-95	basic leucine zipper 9-like
TrEMBL	A0A078JXY5	8e-96	A0A078JXY5_BRANA; BnaUnng03790D protein
STRING	Bo2g168170.1	6e-94	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3338	26	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49760.1	2e-20	basic leucine-zipper 5

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]