PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00098107001
Common NameGSBRNA2T00098107001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 434aa    MW: 47816.6 Da    PI: 7.7272
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00098107001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.31.2e-07252299455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L  l+P +    +k   Ka +L + ++Y++sLq
  GSBRNA2T00098107001 252 SHSLAERVRREKIGERMKLLENLVPGC----NKVTGKALMLDEIINYVQSLQ 299
                          8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.39E-7246303No hitNo description
SuperFamilySSF474591.3E-15246311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-15248313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.665248298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-5252299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-8254304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MDNELFMNTE LHPPPEMAMH FEQPSCSSPM LNWPLMNPNL SQYSPPQDCF TWEKSTEQQQ  60
KQSIFDSALS SLVSSPTPSN SNFSGGVGGG DGFVIRELIG KLGNSSTTPN RTTPLTEFSG  120
DPGFAERAAR FSCFGSRSFN GRTNSSLPVN NSKIINSGKL TRVVSTPALH GLVSPMAPAG  180
EFSRKRKHLT KVKSKETPLP TASPAPSFSK TAEEKGGKRR RREDEKEDNT KGPEPPKDYI  240
HVRARRGQAT DSHSLAERVR REKIGERMKL LENLVPGCNK VTGKALMLDE IINYVQSLQR  300
QVEFLSMKLS SVNDTRLDFN VDALVSKDVM IPSSSNRLHE AGLQAESLSH HSYDNSSQLH  360
TNVSSSNMML QSPVNSLETS TLASSFTHLP TLTQFTDSIS QYQMFSQEDL QSIVGMGVAH  420
NPNHESQNMK IEL*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA to G box 5'-CACGTG-3' and to E-box 5'-CANNTG-3' (By similarity). Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000250|UniProtKB:Q8GY61, ECO:0000269|PubMed:24130508}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00098107001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4886101e-135AF488610.1 Arabidopsis thaliana clone bHLH078 putative bHLH transcription factor mRNA, complete cds.
GenBankBT0029451e-135BT002945.1 Arabidopsis thaliana clone RAFL14-96-A17 (R20245) unknown protein (At5g48560) mRNA, complete cds.
GenBankBT0056371e-135BT005637.1 Arabidopsis thaliana clone U20245 unknown protein (At5g48560) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013721331.10.0transcription factor bHLH78-like isoform X1
SwissprotQ9FJL40.0BH078_ARATH; Transcription factor bHLH78
TrEMBLA0A078IM550.0A0A078IM55_BRANA; BnaA02g30270D protein
STRINGBra020691.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23322775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48560.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]