PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00098193001
Common NameGSBRNA2T00098193001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 103aa    MW: 12004.7 Da    PI: 6.8281
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00098193001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.92.6e-111096489
                         E-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3  4 vltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
                         vlt  d +++g+l+lp + +e++       + ++++ ++ + d + +s+ v+l  +k++ +y++++GWk+  ++ +Lk+gD++ ++ ++ ++
  GSBRNA2T00098193001 10 VLTDTDLSTQGWLILPTQKIENIeknlgfTL-PRNGAQVEILD-NDKSYWVNL--NKNKAGYYIGQGWKSLRDERDLKTGDVIQLYWKD-TK 96
                         688899999***********88887787533.34666788888.557777***..****************************999543.43 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.5E-13594IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-14696IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.1077102IPR003340B3 DNA binding domain
SMARTSM010193.2E-87102IPR003340B3 DNA binding domain
CDDcd100172.36E-108100No hitNo description
PfamPF023621.8E-91097IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MDPDMMTKRV LTDTDLSTQG WLILPTQKIE NIEKNLGFTL PRNGAQVEIL DNDKSYWVNL  60
NKNKAGYYIG QGWKSLRDER DLKTGDVIQL YWKDTKFIFS MW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00098193001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013628005.11e-69PREDICTED: B3 domain-containing protein At1g08985
SwissprotQ8GWU11e-39Y1898_ARATH; B3 domain-containing protein At1g08985
TrEMBLA0A078JS023e-68A0A078JS02_BRANA; BnaCnng67860D protein
TrEMBLA0A0D3BE613e-68A0A0D3BE61_BRAOL; Uncharacterized protein
TrEMBLA0A3P6B1203e-68A0A3P6B120_BRAOL; Uncharacterized protein
STRINGBo3g092070.15e-69(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141701218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08985.15e-42B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]