PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00098212001

Common Name

GSBRNA2T00098212001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GeBP

Protein Properties

Length: 161aa MW: 18912.8 Da PI: 8.4091

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00098212001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	43.6	8.3e-14	13	64	6	57
DUF573 6 lwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveK 57 +w+ +D +++L+G++++++++g + +d+d fy + k+ i++++sk+ql+e GSBRNA2T00098212001 13 IWNIKDVLLILKGIVEYENERGFRYNSDWDIFYGYTKDLINIRFSKKQLMEE 64 8************************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MVRRRKQQKK YLIWNIKDVL LILKGIVEYE NERGFRYNSD WDIFYGYTKD LINIRFSKKQ 60 LMEEDVPLVE QKQVNDTRID KDKSEELGGM DEFDALQDAL EASTSFQSVG KTQQKMLFQN 120 LKTLGAQRRK ELAGEWKALL NEEMELHMQK LTFLAKLPCA *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00098212001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013593965.1	3e-82	PREDICTED: uncharacterized protein LOC106302008 isoform X2
TrEMBL	A0A078JY18	1e-113	A0A078JY18_BRANA; BnaCnng67950D protein
STRING	Bo6g064760.1	3e-85	(Brassica oleracea)
STRING	Bo7g043690.1	2e-81	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14516	8	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36340.1	3e-17	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]