PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00098300001
Common NameGSBRNA2T00098300001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 702aa    MW: 78639.2 Da    PI: 6.3438
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00098300001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM99.54.8e-313224561128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.. 79 
                          lp+G++F+P+d e++++ L+k  +        +  +e+i++vd    i++++P++Lp  vk++ +  +fF+++ k+y+tg+rk+r+++  
  GSBRNA2T00098300001 322 LPRGVKFDPSDPEIIWHLLAKTGSLGLaphpfI--DEFIPTVDqddgICYTHPKNLP-GVKHDGTMSHFFHRAIKAYSTGTRKRRKIQdd 408
                          699************888877644333454332..334666655567**********.677788999******************86655 PP

                  NAM  80 ...sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                             + +W++tg++k+v+  +g + g+kk++v+y+g++   +kt+Wvmh+y+l
  GSBRNA2T00098300001 409 dlgDMRWHKTGRTKTVVL-DGVQRGCKKIMVLYEGKS---VKTNWVMHQYHL 456
                          655778************.99************7665...56********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5093936.5549210IPR006593Cytochrome b561/ferric reductase transmembrane
CDDcd087661.93E-6742176No hitNo description
PfamPF031885.7E-3743172IPR006593Cytochrome b561/ferric reductase transmembrane
SMARTSM006654.3E-4943168IPR006593Cytochrome b561/ferric reductase transmembrane
SuperFamilySSF1019414.58E-36307475IPR003441NAC domain
PROSITE profilePS5100531.065322475IPR003441NAC domain
PfamPF023651.4E-12323456IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MGSDSLVLFA RLLGFAIAIV VVYWFLLFKS SFAPRKGLTK TTIHALLMVI GFILVSGEAI  60
LIHRWLPGSR KTKKAVHLLL QGVALVSAVI GMWTKFHYES GIFSNFYSLH SWMGLLSVSL  120
FAAQWVTGFL SFWHRGEVRE TRSTFLPWHV FLGLYIYGLA IATAETGLLV KLTHLQTKRN  180
LPRRCAESVV LNGVGLGLVL LCAIVIASAV LPKYQKSHSD EVKELIISSH SHYAITRKNK  240
ECLNGDAKFF YLGFSDSVFS RFLHRALMAG RAWLVDKNRI ATKILSASDP CPTVWNTNPT  300
RHCPNCHHVI DNGHEVDDWP GLPRGVKFDP SDPEIIWHLL AKTGSLGLAP HPFIDEFIPT  360
VDQDDGICYT HPKNLPGVKH DGTMSHFFHR AIKAYSTGTR KRRKIQDDDL GDMRWHKTGR  420
TKTVVLDGVQ RGCKKIMVLY EGKSVKTNWV MHQYHLGTDE DEKDGQYVVS KIFYQQQGVL  480
KKGGDKAEEE VSEDIFDPVT PRLFTPEPSR QAVPLRSDSH FANDYVTAHE VFLAQTSEAM  540
YMEDEVQRNV ERPSSEDEPA PETGIENREN ETMIHDKEDE NDQENKEGEE NHQAEEEENL  600
LDSGGSQFIL NSQQLVEALA LCDDLLQVGS QDTNNGGGGG GLRNKQQPCF GDYAHLGGTD  660
DFKLVLDPCN IDLDTPPEFR LSQLEFGSQE SFLAWGTGKT D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4o6y_A2e-5112126220Probable transmembrane ascorbate ferrireductase 2
4o6y_B2e-5112126220Probable transmembrane ascorbate ferrireductase 2
4o79_A2e-5112126220Probable transmembrane ascorbate ferrireductase 2
4o79_B2e-5112126220Probable transmembrane ascorbate ferrireductase 2
4o7g_A2e-5112126220Probable transmembrane ascorbate ferrireductase 2
4o7g_B2e-5112126220Probable transmembrane ascorbate ferrireductase 2
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in shoot and root apical meristems, in lateral root primordia, in the vasculature of young leaves and in the root stele. {ECO:0000269|PubMed:23907539}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00098300001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894761e-148AC189476.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB080N15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013708799.10.0SUPPRESSOR OF GAMMA RESPONSE 1-like
SwissprotQ6NQK20.0NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1
TrEMBLA0A078IPV00.0A0A078IPV0_BRANA; BnaA07g37110D protein
STRINGBra012470.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97072736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.10.0NAC family protein
Publications ? help Back to Top
  1. Yi D, et al.
    The Arabidopsis SIAMESE-RELATED cyclin-dependent kinase inhibitors SMR5 and SMR7 regulate the DNA damage checkpoint in response to reactive oxygen species.
    Plant Cell, 2014. 26(1): p. 296-309
    [PMID:24399300]
  2. Biever JJ,Brinkman D,Gardner G
    UV-B inhibition of hypocotyl growth in etiolated Arabidopsis thaliana seedlings is a consequence of cell cycle arrest initiated by photodimer accumulation.
    J. Exp. Bot., 2014. 65(11): p. 2949-61
    [PMID:24591052]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Hu Z,Cools T,Kalhorzadeh P,Heyman J,De Veylder L
    Deficiency of the Arabidopsis helicase RTEL1 triggers a SOG1-dependent replication checkpoint in response to DNA cross-links.
    Plant Cell, 2015. 27(1): p. 149-61
    [PMID:25595823]
  5. Chen P,Umeda M
    DNA double-strand breaks induce the expression of flavin-containing monooxygenase and reduce root meristem size in Arabidopsis thaliana.
    Genes Cells, 2015. 20(8): p. 636-46
    [PMID:26033196]
  6. Sjogren CA,Bolaris SC,Larsen PB
    Aluminum-Dependent Terminal Differentiation of the Arabidopsis Root Tip Is Mediated through an ATR-, ALT2-, and SOG1-Regulated Transcriptional Response.
    Plant Cell, 2015. 27(9): p. 2501-15
    [PMID:26320227]
  7. Yoshiyama KO
    SOG1: a master regulator of the DNA damage response in plants.
    Genes Genet. Syst., 2016. 90(4): p. 209-16
    [PMID:26617076]
  8. Weimer AK, et al.
    The plant-specific CDKB1-CYCB1 complex mediates homologous recombination repair in Arabidopsis.
    EMBO J., 2016. 35(19): p. 2068-2086
    [PMID:27497297]
  9. Davis OM,Ogita N,Inagaki S,Takahashi N,Umeda M
    DNA damage inhibits lateral root formation by up-regulating cytokinin biosynthesis genes in Arabidopsis thaliana.
    Genes Cells, 2016. 21(11): p. 1195-1208
    [PMID:27658920]
  10. Pedroza-García JA, et al.
    Function of the Plant DNA Polymerase Epsilon in Replicative Stress Sensing, a Genetic Analysis.
    Plant Physiol., 2017. 173(3): p. 1735-1749
    [PMID:28153919]
  11. Horvath BM, et al.
    Arabidopsis RETINOBLASTOMA RELATED directly regulates DNA damage responses through functions beyond cell cycle control.
    EMBO J., 2017. 36(9): p. 1261-1278
    [PMID:28320736]
  12. Sjogren CA,Larsen PB
    SUV2, which encodes an ATR-related cell cycle checkpoint and putative plant ATRIP, is required for aluminium-dependent root growth inhibition in Arabidopsis.
    Plant Cell Environ., 2017. 40(9): p. 1849-1860
    [PMID:28556304]
  13. Yoshiyama KO,Kaminoyama K,Sakamoto T,Kimura S
    Increased Phosphorylation of Ser-Gln Sites on SUPPRESSOR OF GAMMA RESPONSE1 Strengthens the DNA Damage Response in Arabidopsis thaliana.
    Plant Cell, 2017. 29(12): p. 3255-3268
    [PMID:29208704]
  14. Johnson RA, et al.
    SUPPRESSOR OF GAMMA RESPONSE1 Links DNA Damage Response to Organ Regeneration.
    Plant Physiol., 2018. 176(2): p. 1665-1675
    [PMID:29222192]
  15. Ogita N, et al.
    Identifying the target genes of SUPPRESSOR OF GAMMA RESPONSE 1, a master transcription factor controlling DNA damage response in Arabidopsis.
    Plant J., 2018. 94(3): p. 439-453
    [PMID:29430765]
  16. Cao X, et al.
    Roles of MSH2 and MSH6 in cadmium-induced G2/M checkpoint arrest in Arabidopsis roots.
    Chemosphere, 2018. 201: p. 586-594
    [PMID:29533809]