PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00098341001
Common NameGSBRNA2T00098341001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 543aa    MW: 61559.3 Da    PI: 5.4326
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00098341001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.72.6e-053694021755
                          HHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  17 NsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          N++f+ L+ ++P+ +       ++K eiL  +++Y+++L+
  GSBRNA2T00098341001 369 NEKFSVLKAMVPTvN------QVDKEEILNNTIKYLQELE 402
                          9************66......7***************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.5E-5019217IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.391352401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-7358407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.82E-4366406No hitNo description
SuperFamilySSF474596.28E-8367416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-8369412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048629Biological Processtrichome patterning
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MAGGVEAASG RSKSKNNLLR KQLAVALRSV QWSYAIFWSS SLTQPGVLEW EEGCYNGDIK  60
KRKKSYEAAQ YKYALQRSNQ LRKLYLCMLE GDSNTTISTT HDVDDYGDDE EHNCNSATSM  120
MLSPDDLSDE EWYYIVSMSY VFSPSQCLPG RALVTGETIW LCNAQYTDNK LFSRSLLARS  180
ASIQTVVCFP YLGGVIELGV TELISEDHSL LQHIKSCLLE TSKPDCASYT FSARRDSDDE  240
KYQTKIKTSD GNSNSVLQGN HQIQSDEDVH YKRTVSTLLK YAADKDIPHL QPDLVSTNTE  300
SSFLRWKQRE QPNSILFQEH SNLQTLSQNM LRKILQDVPL MHSLDTKRTL PSKTFGLNQD  360
DPWDTRKENE KFSVLKAMVP TVNQVDKEEI LNNTIKYLQE LEGRVEELES CMGSVNFAER  420
QRKSVNDSVL IEETSGNYDE STKIDGNSGE TEQVTIVRDE THLRVKLKET EVVMEVRCSY  480
RDYIVADIME TLSKLHMDAF SVRSYTLNGF LTLNLKAKFR GAAVASVGMI KRELRRVIGE  540
II*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-11192189192Transcription factor MYC3
4rqw_B1e-11192189192Transcription factor MYC3
4rs9_A1e-11192189192Transcription factor MYC3
4yz6_A1e-11192189192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15963KKRKK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in developing seeds. Also detected in stems and leaves. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:8980509}.
Functional Description ? help Back to Top
Source Description
UniProtTrancsription activator, when associated with MYB75/PAP1 or MYB90/PAP2. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00098341001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111480.20.0PREDICTED: transcription factor MYC1
SwissprotQ8W2F10.0BH012_ARATH; Transcription factor MYC1
TrEMBLA0A078IJA80.0A0A078IJA8_BRANA; BnaA09g51900D protein
STRINGBo9g002370.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117701832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00480.10.0bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]