PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00098391001
Common NameGSBRNA2T00098391001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CAMTA
Protein Properties Length: 1026aa    MW: 114599 Da    PI: 5.6242
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00098391001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1170.72.2e-53231382116
                 CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahsee 90 
                          ++e ++rwlk+ e++ iL+n+e+++l+++++++p+sgsl L+nr+++++frkDG++w++kkdg+++ E+he+LKvg+ve+l+cyY+h+e+
  GSBRNA2T00098391001  23 YQEaHTRWLKPPEVHFILQNHERYQLAHTPPQNPTSGSLYLFNRRVLKFFRKDGHQWRRKKDGRAIAEAHERLKVGNVEALSCYYVHGEH 112
                          566699************************************************************************************ PP

                 CG-1  91 nptfqrrcywlLeeelekivlvhyle 116
                          +ptfqrr+yw+L+ e+++ivlvhy++
  GSBRNA2T00098391001 113 DPTFQRRIYWMLDPEYDHIVLVHYRD 138
                          ************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143775.18719145IPR005559CG-1 DNA-binding domain
SMARTSM010763.0E-7622140IPR005559CG-1 DNA-binding domain
PfamPF038591.8E-4625138IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.5E-9468556IPR013783Immunoglobulin-like fold
PfamPF018332.2E-8469552IPR002909IPT domain
SuperFamilySSF812962.1E-17469553IPR014756Immunoglobulin E-set
CDDcd001029.19E-7469554No hitNo description
Gene3DG3DSA:1.25.40.201.0E-14655751IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.159656748IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.44E-15658751IPR020683Ankyrin repeat-containing domain
CDDcd002047.34E-13676748No hitNo description
PfamPF127964.6E-7681749IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.538689721IPR002110Ankyrin repeat
SMARTSM002480.0075689718IPR002110Ankyrin repeat
SMARTSM0001514802824IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.73E-6804910IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.638804831IPR000048IQ motif, EF-hand binding site
SMARTSM000150.97858880IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.407859888IPR000048IQ motif, EF-hand binding site
PfamPF006120.0079861879IPR000048IQ motif, EF-hand binding site
SMARTSM000156.3E-4881903IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.267882906IPR000048IQ motif, EF-hand binding site
PfamPF006126.7E-5884903IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1026 aa     Download sequence    Send to blast
MASHLKTFIS IIMQSEYEIS TLYQEAHTRW LKPPEVHFIL QNHERYQLAH TPPQNPTSGS  60
LYLFNRRVLK FFRKDGHQWR RKKDGRAIAE AHERLKVGNV EALSCYYVHG EHDPTFQRRI  120
YWMLDPEYDH IVLVHYRDIS DGKEGRQSSG TVLQFSQNAS TLFSSPSSIG TQNARYNHYI  180
GDSTDLLQQH SSTSPEVNSE AVFNSNGVET PQGSGSSYEF ENRQAIKRLE EQLSLGDDIV  240
STVDPLYAQN ESLDSLQFLA QPGTVYQRPE NNKLERCYGG YVGAQYNVDP LYSQNESLDS  300
LLSLDCTEDI NHHAQPASGH QRPENNRLER SYGGYIGADY HPNNLTLAKN DTGGNGGSGD  360
QESESWKDVL EACEASVALN SEGSTPSSVK GLLPGMQEDS NWSYSNQADQ GTLLLPQELG  420
SFEHPGCYPE LGAPENNAEY SRVMDDEGIN RMPLQQEMRP AVSHKQEFTI QDVSPEWGYA  480
NETTKVIIIG SFLCDPTEST WSCMFGSVEV PFEIIKEGVI RCEAPPCGPG KVNLRITSGD  540
GLSCSQIKEF EYRDKPDTSC SRCSRDELFL LVRFVQTLLS DKKSNIEPGS DKLKKIKADD  600
DDEEWSHIID TILDDTATPS STVDWLLQKL LKDKLDAWLS SRSQDEDQTS CSLSKQEQGI  660
IHMVAGLGFD WALHPILSLG VSVDFRDSNG WSALHWAARY GREKMVAALI ASRASAGAVT  720
DPNAQDPAGK TAASIAAANG HKGLAGYLSE VALTNHLSSL TLEETEHSLG SAQMQAEMIV  780
NSISGRSPPG NDDPHSRAAL RNVAQAAARI QAAFRAHSFR KRQEREAAMA ACYQEYGIYA  840
DIEGIAAMSK LAFGNVKNYN SAALSIQKKY RGYKGRKEFL AKRQKVVKIQ AYVRGYQVRK  900
HYKVICWAVG ILDKVVLRWR RKGVGLKGFR QDVESREEES EDEDILKVFR KEKVDGAVNE  960
AFSRVLSMTN SPDARQQYQR VLKRYCQTKA ELGKTETLGT YGGDEDDNVL LDIADMQYEN  1020
LRTLP*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12218065}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00098391001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892000.0AC189200.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB005J17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013620826.10.0PREDICTED: calmodulin-binding transcription activator 4-like
RefseqXP_013671039.10.0calmodulin-binding transcription activator 4-like
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A078IP550.0A0A078IP55_BRANA; BnaC02g45620D protein
STRINGBo2g055720.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64762642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]