PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00098539001
Common NameGSBRNA2T00098539001, LOC106356654
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 336aa    MW: 38211.6 Da    PI: 8.0795
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00098539001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1676.4e-52171432128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                           pGfrFhPtdeelv++yLk+kv +++l++ e ik+vdiyk++PwdLpk ++ +ekewyf+++rd+ky++++r+nr+t  g+Wkatg+d++
  GSBRNA2T00098539001  17 LPGFRFHPTDEELVSFYLKRKVLHRSLPF-ELIKKVDIYKYDPWDLPKLAAMGEKEWYFYCPRDRKYRNSTRPNRVTGGGFWKATGTDRP 105
                          69**************************9.89***************8778899************************************ PP

                  NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++s  +++ +glkk+Lvfy+gra kg+ktdW+mhe+rl
  GSBRNA2T00098539001 106 IYSLdSTRCIGLKKSLVFYRGRAAKGSKTDWMMHEFRL 143
                          **9856677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.02E-5815186IPR003441NAC domain
PROSITE profilePS5100556.16416186IPR003441NAC domain
PfamPF023651.2E-2518143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MDDEESNNVE RFDDVVLPGF RFHPTDEELV SFYLKRKVLH RSLPFELIKK VDIYKYDPWD  60
LPKLAAMGEK EWYFYCPRDR KYRNSTRPNR VTGGGFWKAT GTDRPIYSLD STRCIGLKKS  120
LVFYRGRAAK GSKTDWMMHE FRLPSLSDSH RSSSYPSYNN KKQHHNINNK EIPSSDAWAI  180
CRIFKKTNSV SSQRSVPQSW LHPAIPETSQ YNSVSQTTTL FASTDVFSNI PTRQNLISSP  240
VDEPASFTES AAAYFASQML GVPYNIARNN GTGDAMFLRN SETENVLFPS NNEDNYFHNL  300
AGGLTHELPN VRSMVETGFE TTASEMSATY SPPNT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-521818917171Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00098539001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0168761e-118AB016876.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKM21.
GenBankCP0026881e-118CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankHG9686031e-118HG968603.1 Arabidopsis thaliana T-DNA flanking sequence, clone GK-027D08-028756.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013651846.10.0putative NAC domain-containing protein 94
SwissprotQ9FIW50.0NAC94_ARATH; Putative NAC domain-containing protein 94
TrEMBLA0A3P6B1G40.0A0A3P6B1G4_BRACM; Uncharacterized protein
STRINGBra028441.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.11e-179NAC domain containing protein 94
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]