PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00098694001
Common NameGSBRNA2T00098694001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 241aa    MW: 28599.3 Da    PI: 7.0227
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00098694001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.65.9e-181158148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+W +eEde+lv+ v++lG ++W++ ar  g++R++k+c++rw +yl
  GSBRNA2T00098694001 11 RGPWLEEEDERLVKFVTLLGERRWDSLARVSGLKRSGKSCRLRWMNYL 58
                         89********************************************97 PP
2Myb_DNA-binding52.31.3e-1665109248
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          g++++eE+ ++ ++++++G++ W+ Iar+++ gRt++q+k++w+++l
  GSBRNA2T00098694001  65 GPMSQEEEIIIFQLHALWGNK-WSNIARRLP-GRTDNQIKNYWRTHL 109
                          789******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.53658IPR017930Myb domain
SuperFamilySSF466899.58E-289105IPR009057Homeodomain-like
SMARTSM007171.1E-131060IPR001005SANT/Myb domain
PfamPF002491.5E-141158IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-181265IPR009057Homeodomain-like
CDDcd001671.09E-81358No hitNo description
PROSITE profilePS5129425.6559113IPR017930Myb domain
SMARTSM007172.5E-1663111IPR001005SANT/Myb domain
PfamPF002495.1E-1565109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2466113IPR009057Homeodomain-like
CDDcd001672.52E-1066109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MDCKKEDALR RGPWLEEEDE RLVKFVTLLG ERRWDSLARV SGLKRSGKSC RLRWMNYLNP  60
SLKCGPMSQE EEIIIFQLHA LWGNKWSNIA RRLPGRTDNQ IKNYWRTHLR KKMDAQNYDK  120
IIDWRGNKGE ELLHKYKETE IMWTRTKTRE HGFDETVKEY KQKNMESDKE TNGVICETER  180
FGVMNSPYEN RIIDLISKSD ANIFEDHGSS STDNNININV GSWWFQEIMD FEEFSCSLWS  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-2891132105MYB PROTO-ONCOGENE PROTEIN
1h88_C9e-28911356159MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-28911356159MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-2891132105C-Myb DNA-Binding Domain
1msf_C3e-2891132105C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00098694001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1172561e-139AK117256.1 Arabidopsis thaliana At3g53200 mRNA for putative transcription factor (MYB27), complete cds, clone: RAFL16-81-D10.
GenBankAY5195991e-139AY519599.1 Arabidopsis thaliana MYB transcription factor (At3g53200) mRNA, complete cds.
GenBankBT0052571e-139BT005257.1 Arabidopsis thaliana At3g53200 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013652573.11e-178transcription factor MYB27-like
SwissprotQ9SCP11e-125MYB27_ARATH; Transcription factor MYB27
TrEMBLA0A397YTR31e-177A0A397YTR3_BRACM; Uncharacterized protein
STRINGBra028550.1-P1e-172(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM113972533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.11e-127myb domain protein 27
Publications ? help Back to Top
  1. Albert NW, et al.
    A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots.
    Plant Cell, 2014. 26(3): p. 962-80
    [PMID:24642943]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]