PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00098828001
Common NameGSBRNA2T00098828001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 260aa    MW: 28760.6 Da    PI: 9.6847
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00098828001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.89.9e-13188231547
                          CHHHCHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKka.eieeLeekvkeLeaeNkaLkk 47 
                          ++++r++kNRe+A rsR+RK++ ++ eLe  v  Le+eN++L+ 
  GSBRNA2T00098828001 188 RKQKRMIKNRESAARSRARKQQaYTHELEINVSRLEEENERLRR 231
                          689*****************75499*****************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.2E-11182232No hitNo description
SMARTSM003382.0E-6184257IPR004827Basic-leucine zipper domain
CDDcd147077.54E-22188243No hitNo description
SuperFamilySSF579591.31E-7188234No hitNo description
PfamPF001701.1E-9188232IPR004827Basic-leucine zipper domain
PROSITE patternPS000360191206IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MDSHRVIVED PKSQFLNRQQ GSSLYTLTLD EVQTHLGSSG KPLGSMNLDE LLKSVCSVEP  60
NQPPSVAVNE GLSRQGSLAL PRAHERRDKQ GTLGEMTLED LLLKAGVVTE TIPGSNHDDP  120
GGGAGLAPWV QYHQLPSMTQ PRSFLPYLVA DMQVMVSQAS LMGGLSDTQT PGRKRVASGE  180
VVEKIVERKQ KRMIKNRESA ARSRARKQQA YTHELEINVS RLEEENERLR RQKEVEKILP  240
SAPPPDPKRQ LRRTSSAPF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200208ARSRARKQQ
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269|PubMed:15642716}.
UniprotTISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269|PubMed:12376636}.
Functional Description ? help Back to Top
Source Description
UniProtBinds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00098828001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895060.0AC189506.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB088E10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013746683.10.0ABSCISIC ACID-INSENSITIVE 5-like protein 2
SwissprotQ9LES31e-144AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBLA0A397YWL00.0A0A397YWL0_BRACM; Uncharacterized protein
STRINGBo6g072380.11e-162(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18842883
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56850.11e-130ABA-responsive element binding protein 3
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Kim H, et al.
    ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis.
    Plant Mol. Biol., 2016. 90(3): p. 303-15
    [PMID:26667153]
  3. Song C,Kim T,Chung WS,Lim CO
    The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions.
    Mol. Cells, 2017. 40(8): p. 577-586
    [PMID:28756655]