PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00098926001

Common Name

GSBRNA2T00098926001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 312aa MW: 36227.9 Da PI: 5.9058

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00098926001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.5	1.7e-55	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtdeelv +yL +kv+g+++el e+i+evd+yk+ePwdLp k + +++ ewyf+s+rdkky++g+r+nrat++gyWkatgk GSBRNA2T00098926001 6 LPPGFRFHPTDEELVAYYLDRKVNGRTIEL-EIIPEVDLYKCEPWDLPeKsFLPGNDMEWYFYSTRDKKYPNGSRTNRATRAGYWKATGK 94 79**************************.99**********95334455788**************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 d++v s k+ + g+kktLv+y+grap+g +t+Wvmheyrl GSBRNA2T00098926001 95 DRAVES-KKMKLGMKKTLVYYRGRAPHGLRTNWVMHEYRL 133 *9.8999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-62	3	157	IPR003441	NAC domain
PROSITE profile	PS51005	59.279	6	157	IPR003441	NAC domain
Pfam	PF02365	6.9E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MAPMSLPPGF RFHPTDEELV AYYLDRKVNG RTIELEIIPE VDLYKCEPWD LPEKSFLPGN 60 DMEWYFYSTR DKKYPNGSRT NRATRAGYWK ATGKDRAVES KKMKLGMKKT LVYYRGRAPH 120 GLRTNWVMHE YRLTHLPFSS PSSSIKESYA LCRVFKKHIQ IPKRKDEEMM MGTSVGKEKK 180 EEEEENMWRK CDKVMMERES DEDESLKIAS AETSSSELTQ GILLDEANNS SNFPLHFSSS 240 LLDDHDQFFA NYSHLPYYPP LQLQDFPQIS INEAQIMSTE YSKQQDFQCR DSMNGTLDEI 300 FSFSSSATFP L*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-55	1	158	12	166	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-55	1	158	12	166	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-55	1	158	12	166	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-55	1	158	12	166	NO APICAL MERISTEM PROTEIN
3swm_A	1e-55	1	158	15	169	NAC domain-containing protein 19
3swm_B	1e-55	1	158	15	169	NAC domain-containing protein 19
3swm_C	1e-55	1	158	15	169	NAC domain-containing protein 19
3swm_D	1e-55	1	158	15	169	NAC domain-containing protein 19
3swp_A	1e-55	1	158	15	169	NAC domain-containing protein 19
3swp_B	1e-55	1	158	15	169	NAC domain-containing protein 19
3swp_C	1e-55	1	158	15	169	NAC domain-containing protein 19
3swp_D	1e-55	1	158	15	169	NAC domain-containing protein 19
4dul_A	2e-55	1	158	12	166	NAC domain-containing protein 19
4dul_B	2e-55	1	158	12	166	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in a few sieve element cells before enucleation and in phloem-pole pericycle cells. {ECO:0000269\|PubMed:25081480}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00205	DAP	Transfer from AT1G54330	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00098926001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK176278	1e-147	AK176278.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL23-20-J17.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022572074.1	0.0	NAC domain-containing protein 71-like
Swissprot	Q9FFI5	4e-82	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A3P6BE60	0.0	A0A3P6BE60_BRACM; Uncharacterized protein
STRING	Bo6g036040.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8123	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54330.1	1e-170	NAC domain containing protein 20

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]