PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00099137001
Common NameGSBRNA2T00099137001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 784aa    MW: 87990.7 Da    PI: 8.0096
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00099137001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.95.5e-21133188156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          r+k +++t++q++ +e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  GSBRNA2T00099137001 133 RKKYHRHTTDQIRHMEALFKETPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 188
                          7999************************************************9877 PP
2START229.21.2e-712935211206
                          HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S... CS
                START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla... 77 
                          e+a++a+ el+k+a+++ep+W +s     e++n+de+l++f+++++      +++ea+r++g+v+m++++l ++++d+  qW+e++a   
  GSBRNA2T00099137001 293 EIANRATLELQKMATSGEPLWLRSLetgrEILNYDEYLKEFPQDQTssfhgrKTIEASRDVGIVFMDAHKLAQSFMDVE-QWKEMFAcli 381
                          578999*************************************************************************.********** PP

                          .EEEEEEEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--...-TTSEE-EESSEEEEEEE CS
                START  78 .kaetlevissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe..sssvvRaellpSgiliep 156
                           ka t++vi++g       ga+qlm+ e+q+l+p+vp R+++fvR++rql+a++w+ivdvSv++e++++   +  + R++++pSg++ie+
  GSBRNA2T00099137001 382 sKAVTVDVIRQGegpsridGAIQLMFGEMQLLTPVVPtREVYFVRSCRQLSAEKWAIVDVSVSVEEDNNAekEGALLRCRKRPSGCIIED 471
                          ******************************************************************99987677799************* PP

                          ECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 157 ksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                          +snghskvtwveh dl++++++ l+rs+v++gla+gak+wvatlq +ce+
  GSBRNA2T00099137001 472 TSNGHSKVTWVEHLDLSASTVQPLFRSFVNTGLAFGAKHWVATLQLHCER 521
                          ************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-22119184IPR009057Homeodomain-like
SuperFamilySSF466898.77E-20125191IPR009057Homeodomain-like
PROSITE profilePS5007117.815130190IPR001356Homeobox domain
SMARTSM003899.6E-18132194IPR001356Homeobox domain
PfamPF000462.8E-18133188IPR001356Homeobox domain
CDDcd000866.32E-16137188No hitNo description
PROSITE patternPS000270165188IPR017970Homeobox, conserved site
PROSITE profilePS5084843.324284524IPR002913START domain
SuperFamilySSF559611.37E-31287521No hitNo description
CDDcd088751.41E-107288520No hitNo description
SMARTSM002341.1E-80293521IPR002913START domain
PfamPF018522.2E-64293521IPR002913START domain
Gene3DG3DSA:3.30.530.202.2E-8347521IPR023393START-like domain
SuperFamilySSF559612.11E-16550769No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 784 aa     Download sequence    Send to blast
MSNDGKLMFK YLIFNRFWPC FKVIKRGKIK QIKISERMSM AVEMSSKQPT KDFFSSPALS  60
LSLAGIFRNA SSGSTNPEED FLGRRVADDE DRTVEMSSEN SGPTRSRSED NLEGEEDQEE  120
EDGAGNKGNK RKRKKYHRHT TDQIRHMEAL FKETPHPDEK QRQQLSKQLG LAPRQVKFWF  180
QNRRTQIKAI QERHENSLLK AELEKLREEN KAMRESFSKA NSSSCLNCGG GGSPDDLHLE  240
NTKLKAELDK LRAALGRTPY PLQASCSDDQ QRRVGSLELY TGVFALEKSR IVEIANRATL  300
ELQKMATSGE PLWLRSLETG REILNYDEYL KEFPQDQTSS FHGRKTIEAS RDVGIVFMDA  360
HKLAQSFMDV EQWKEMFACL ISKAVTVDVI RQGEGPSRID GAIQLMFGEM QLLTPVVPTR  420
EVYFVRSCRQ LSAEKWAIVD VSVSVEEDNN AEKEGALLRC RKRPSGCIIE DTSNGHSKVT  480
WVEHLDLSAS TVQPLFRSFV NTGLAFGAKH WVATLQLHCE RLVFFMATNV PTKDSLGVTT  540
LAGRKSVLKM AQRMTQSFYR AIAASSYHQW NKITTKTGQD MRVSSRKNLH DPGEPTGVIV  600
CASSSLWLPV SPTLLFDFFR DETRRHEWDA LSNGAHVQSI VSLSKGQDRG NSVSIQTVKS  660
REKSTWVLQD SCTNSYESVV VYAPVDINTT QMVIAGHDPS NIQILPCGFS IIPDGVESRQ  720
LVISSAQEAD RNTQGGSLLT MALQTLVNQS PAAKLNMESV ESVTNLVSVT LHNIKRSLQI  780
EDC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130134RKRKK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing trichomes.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00099137001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1882100.0KF188210.1 Brassica villosa BVGL2 (BVGL2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013652056.10.0homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A3P6BUE70.0A0A3P6BUE7_BRACM; Uncharacterized protein
STRINGBra003535.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM123702731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]