PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00099318001
Common NameGSBRNA2T00099318001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 580aa    MW: 65541.8 Da    PI: 6.8125
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00099318001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix91.49.2e-2953137187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW++qe+laL+++r++m+ ++r+++ k+plWeevs+km+e g+ r++k+Ckek+en+ k++k++keg+ ++++++  t+++fdqlea
  GSBRNA2T00099318001  53 RWPRQETLALLKIRSDMGIAFRDSSVKGPLWEEVSRKMAELGYIRNAKKCKEKFENVYKYHKRTKEGRTGKSEGK--TYRFFDQLEA 137
                          8********************************************************************975544..6*******85 PP
2trihelix104.38.8e-33376461187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW+k e+ aLi++r++++++++++  k+plWee+s+ m++ gf+r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  GSBRNA2T00099318001 376 RWPKVEIEALIKLRTNLDSKYQENGPKGPLWEEISAGMKRLGFNRNSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 461
                          8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.08850112IPR001005SANT/Myb domain
PfamPF138374.2E-1852138No hitNo description
CDDcd122035.35E-2252117No hitNo description
PROSITE profilePS500906.95752110IPR017877Myb-like domain
PROSITE profilePS500907.294369433IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.3E-4370432IPR009057Homeodomain-like
SMARTSM007170.0023373435IPR001005SANT/Myb domain
PfamPF138373.8E-22375462No hitNo description
CDDcd122032.27E-26375440No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MMQLGGTTTT AVTSATPPPS NDSAATEAAA AAATVGAFEV SEEMNDRGFG GNRWPRQETL  60
ALLKIRSDMG IAFRDSSVKG PLWEEVSRKM AELGYIRNAK KCKEKFENVY KYHKRTKEGR  120
TGKSEGKTYR FFDQLEALET RPTSSSLHHQ QQPQPPPQTQ PQPLQPQPPL RPHNNNSSMF  180
STPPPPVNVP LFPNISGDFL SDDSTSSSHS TSSDVEVGDG TTTTRKKKRK RKWKEFFERL  240
TRQVVDKQEE LQRKFLEAVE KREHERLVRE ESWRVQEIAR INRERDILAQ ERSMSAAKDA  300
AVMAFLQKLS EKPNPQGQSI PQQQPQPQQP PSQMQVNNNN NQQTPQPPPP PISQPTQPVT  360
PTVDTSKTDN ALSSSRWPKV EIEALIKLRT NLDSKYQENG PKGPLWEEIS AGMKRLGFNR  420
NSKRCKEKWE NINKYFKKVK ESNKKRPEDS KTCPYFHQLD ALYRERNKFH TSNNVIASSS  480
STSGLVKPDN SVPLMVQPEQ QWPPAMATTT MTSTVAATAQ PDQHPPPQPL DKNFDDEEGT  540
DGEEYDEEED YEENEEEEGG EFELVPSNNN NNNKPTNNM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225231KKKRKRK
2226231KKRKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.72430.0flower| leaf| seed
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00099318001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892030.0AC189203.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB006H21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018446335.10.0PREDICTED: trihelix transcription factor GT-2
SwissprotQ391171e-143TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A3P6BBB90.0A0A3P6BBB9_BRACM; Uncharacterized protein
STRINGBra003703.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48492553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.10.0Trihelix family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]