PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00099375001
Common NameGSBRNA2T00099375001, LOC106440337
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 205aa    MW: 22639 Da    PI: 6.519
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00099375001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.5e-184190255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                          ykGVr++  +g+WvAeIr+p   + r +r +lg+f t  eAa a++ a++kl+g
  GSBRNA2T00099375001 41 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFETSREAALAYDSAARKLYG 90
                         69****999.**********8...3.35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.60E-3040100No hitNo description
PfamPF008471.4E-134190IPR001471AP2/ERF domain
PROSITE profilePS5103221.9184198IPR001471AP2/ERF domain
SMARTSM003806.2E-3441104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-304199IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-2141100IPR016177DNA-binding domain
PRINTSPR003679.3E-104253IPR001471AP2/ERF domain
PRINTSPR003679.3E-106480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MSSIEPKVRM VGANKKQRTV NASSRKGCMR GKGGPENASC TYKGVRQRTW GKWVAEIREP  60
NRGARLWLGT FETSREAALA YDSAARKLYG PEAHLNLPES LRSYPETASP GTQVSQTPSS  120
NTSAKSSEES PRLSNEMSSW GTRSEISWEH MNVDLPVTDD SSIWEEATMS LGFPWVHEGN  180
DDISLFNSCI SDGYSNWDSF HSPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1842103668ATERF1
3gcc_A3e-1842103668ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.29140.0seed
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00099375001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104705.11e-150PREDICTED: dehydration-responsive element-binding protein 2D-like
RefseqXP_013737432.11e-150dehydration-responsive element-binding protein 2D
SwissprotQ9LQZ21e-118DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBLA0A397YQE11e-149A0A397YQE1_BRACM; Uncharacterized protein
TrEMBLM4CHR91e-149M4CHR9_BRARP; Uncharacterized protein
STRINGBra003752.1-P1e-150(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53992648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.11e-117ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]