PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00099538001
Common NameGSBRNA2T00099538001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 593aa    MW: 65222.5 Da    PI: 5.642
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00099538001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.73.1e-09498546348
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                          +WT  E  +lv++v+++G g W+ I +        Rt+ ++k++w+++l
  GSBRNA2T00099538001 498 AWTLSEVTQLVEGVAKYGAGKWSEIKKLSFsshSYRTPVDLKDKWRNLL 546
                          7**************************9999**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.015491550IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-13493552IPR009057Homeodomain-like
SMARTSM007171.9E-10495548IPR001005SANT/Myb domain
CDDcd116601.30E-20497547No hitNo description
SuperFamilySSF466892.01E-16497556IPR009057Homeodomain-like
PfamPF002492.7E-7498546IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MGTVVGNVEE CREMFEGSAA QTRITPFSST NQIKNPVTYK LVRVAGDGRL VPATDEEIFE  60
VNETDMHTAS DACQSVGSLS AQGLPSQLEE TSQGLLQSGC VEPSYTEQVN SQPEYNEQML  120
QKVEQDERLA MIHSPHMLSA PDANSQCCNE TNMFNEDHVH HDSSLQQPIP FSSDVQNGCN  180
VDQSNTVVPC SNAEASPKET AAPPATAQRP DFSLVRGEIC LNNLPIKALQ ETFKATFGRE  240
TTVKDKTWLK RRITMGLTNS CNVPTTNLRI TNSKLVGNQD KANDLTDDVR ATNLKDAPPS  300
STDNANGHSN ASGHSLTEDF SSEERAAKRV RKPTRRYIEE LSENDEKQPV VTSKDEKLSE  360
KSEVRSISVS LGKRVTVTRV VSLAGSEIEV PYVSLVRRSR PRENIMALME CHSSCLEAKA  420
SSGESNMLHK EVLKSASGPD QKESATSSSN NEEDVLTEVD QDMETENIDS SGNSSDDNNN  480
IGLPTMQGGG LRRKHHRAWT LSEVTQLVEG VAKYGAGKWS EIKKLSFSSH SYRTPVDLKD  540
KWRNLLRTNF AQSPSNIMGS LKKHGSMHIP MQILLQVREL AEKQALVPPN HR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.152214e-35seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00099538001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009104845.10.0PREDICTED: uncharacterized protein LOC103830781 isoform X1
TrEMBLA0A397YW390.0A0A397YW39_BRACM; Uncharacterized protein
TrEMBLM4CI370.0M4CI37_BRARP; Uncharacterized protein
STRINGBra003870.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43642649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.20.0TRF-like 6
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]