PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00100025001
Common NameGSBRNA2T00100025001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 267aa    MW: 29890.4 Da    PI: 6.6162
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00100025001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.32.1e-18175208134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          Cs+Cgt +Tp+WR gp g+ktLCnaCG+++++ +
  GSBRNA2T00100025001 175 CSHCGTNNTPQWRTGPVGPKTLCNACGVRFKSGR 208
                          *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169929.0E-7718264IPR016679Transcription factor, GATA, plant
SuperFamilySSF577168.08E-15168230No hitNo description
SMARTSM004015.7E-16169219IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.9E-14172206IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.952173205IPR000679Zinc finger, GATA-type
CDDcd002021.59E-15174231No hitNo description
PfamPF003204.9E-16175209IPR000679Zinc finger, GATA-type
PROSITE patternPS003440175200IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MELWTEARAL KASLRGEAIK HQVTVSSEEL SRTSSAEDFS VECFLDFSEE GQEEKLVSVT  60
SSQEEQEQDC CIYSSQPCIF DQLPSLPDEY VEELEWVSRV VDDCSSPEVS LLLTQTHKIK  120
PNFSSSIPVK PRTKRSRNSL TGDRVWPLVS KNQHANGEHG RKEKKEIAVG FQRRCSHCGT  180
NNTPQWRTGP VGPKTLCNAC GVRFKSGRLC PEYRPADSPT FSSEIHSNLH RKVLELRKSK  240
VLVEETGEAT TKSDQVKFAS NAVDRT*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in roots. Also expressed in stems, flowers and leaves. {ECO:0000269|PubMed:12139008}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00100025001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves, less expressed in dark than in light. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527710.0AK352771.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-03-P20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013724977.20.0GATA transcription factor 3
RefseqXP_013724978.20.0GATA transcription factor 3
SwissprotQ8L4M61e-139GATA3_ARATH; GATA transcription factor 3
TrEMBLA0A0D3DHQ10.0A0A0D3DHQ1_BRAOL; GATA transcription factor
STRINGBo7g116990.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57392647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34680.21e-141GATA transcription factor 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]