PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00100375001

Common Name

GSBRNA2T00100375001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 496aa MW: 56866.7 Da PI: 6.5074

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00100375001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	108.3	9.3e-34	157	285	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknr.atksgyWkatgk 88 ppG+rF Ptd e++ +yLk+ + ++k + + i++++iy+++P++L +++k+ + +ew+f s+r k +++g++++r + gyW+++ GSBRNA2T00100375001 157 PPGYRFVPTDAEIIYYYLKPFLPENKKSWPIIpIHHANIYESNPQQLTAEYKKgNLTEWFFISERTKIKRNGQKQKRvDHNGGYWHSKAV 246 9*******************99997776667**********9655551556****************76789**** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +k++++ k+ +vg k+tL ++ g++p+ge+t+W+m+ey l GSBRNA2T00100375001 247 TKKIKV-KKDVVGYKTTLNYFVGKQPNGERTNWLMQEYWL 285 **.8999*************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.53E-40	150	307	IPR003441	NAC domain
PROSITE profile	PS51005	38.105	156	307	IPR003441	NAC domain
Pfam	PF02365	4.1E-18	157	284	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence Send to blast
MVDIYGRAGQ LDKALEIIHV SSCHEDPVLW RTLLGSCKII HRNLELEEVA IYEETDAAQG 60 FQCRGLLPGW SWIEIDDQVH KFVGVSSNMD LIGQLGVTQS GVYSHMVVEL SAVESSICYS 120 KPLSVKMTPQ RNKRRETQQP SPQHEPNMQS SSFLAYPPGY RFVPTDAEII YYYLKPFLPE 180 NKKSWPIIPI HHANIYESNP QQLTAEYKKG NLTEWFFISE RTKIKRNGQK QKRVDHNGGY 240 WHSKAVTKKI KVKKDVVGYK TTLNYFVGKQ PNGERTNWLM QEYWLESSGH NKTVCIVDYA 300 LCKIYLSPTA QKNMKEEDVE EVEEEAVQPR TVEIQQPQPP QFYPTPTPLV SHQPQPQPQF 360 WPTELDSHQA QRQDNEYQEP LQAQPLNTIY QHQSQRHNTE SQYQEPHQPQ PLDTIDHHQP 420 QCHDSAYQNP PQPQPLDTIH YHQSQLHDIE YQEPHHNIWV TSKAASGSAP TVLGSPFGFI 480 PTALSQYSVP TTAAS*

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence Send to blast

MVDIYGRAGQ LDKALEIIHV SSCHEDPVLW RTLLGSCKII HRNLELEEVA IYEETDAAQG  60
FQCRGLLPGW SWIEIDDQVH KFVGVSSNMD LIGQLGVTQS GVYSHMVVEL SAVESSICYS  120
KPLSVKMTPQ RNKRRETQQP SPQHEPNMQS SSFLAYPPGY RFVPTDAEII YYYLKPFLPE  180
NKKSWPIIPI HHANIYESNP QQLTAEYKKG NLTEWFFISE RTKIKRNGQK QKRVDHNGGY  240
WHSKAVTKKI KVKKDVVGYK TTLNYFVGKQ PNGERTNWLM QEYWLESSGH NKTVCIVDYA  300
LCKIYLSPTA QKNMKEEDVE EVEEEAVQPR TVEIQQPQPP QFYPTPTPLV SHQPQPQPQF  360
WPTELDSHQA QRQDNEYQEP LQAQPLNTIY QHQSQRHNTE SQYQEPHQPQ PLDTIDHHQP  420
QCHDSAYQNP PQPQPLDTIH YHQSQLHDIE YQEPHHNIWV TSKAASGSAP TVLGSPFGFI  480
PTALSQYSVP TTAAS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-20	154	305	15	163	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-20	154	305	15	163	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-20	154	305	15	163	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-20	154	305	15	163	NO APICAL MERISTEM PROTEIN
4dul_A	5e-20	154	305	15	163	NAC domain-containing protein 19
4dul_B	5e-20	154	305	15	163	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00100375001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013745280.1	0.0	NAC domain-containing protein 41
TrEMBL	A0A3P6BXS7	0.0	A0A3P6BXS7_BRACM; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2793	15	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56530.1	2e-50	NAC domain containing protein 64

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]