PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00100642001
Common NameGSBRNA2T00100642001, NF-YC10B
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YC
Protein Properties Length: 183aa    MW: 20606.2 Da    PI: 9.6271
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00100642001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC42.21.7e-13741601499
                NF-YC  14 tdfknhelPlarikkilkadedv.kmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                          +d k  ++P+ ri++i+++d+   ++i  +a  l+ ka elfi  ++  ++  + + k++ ++   ++++v++ + ++fl d vp++
  GSBRNA2T00100642001  74 EDAKMIRFPMNRIRRIMRSDNSApQIIMQDAVFLVNKATELFIERFSEEAYGSSVKDKKKFIHYKHLSSVVSNEERYEFLADCVPEK 160
                          6788999*************9873567889999***************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.52E-1779161IPR009072Histone-fold
PfamPF008081.5E-1980144IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.104.5E-2281159IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MVSSKKRKSD GVNKGDGLNA RSSGSKSKKN SSNKANLKDA AKKDAEVHEI SESSSSEGRR  60
DEPKESNGGV VVSEDAKMIR FPMNRIRRIM RSDNSAPQII MQDAVFLVNK ATELFIERFS  120
EEAYGSSVKD KKKFIHYKHL SSVVSNEERY EFLADCVPEK LKAEVALEEW ERSMTDRWKE  180
PT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.109460.0microspore-derived embryo| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00100642001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7971470.0KC797147.1 Brassica napus transcription factor subunit NF-YC10B (NF-YC10B) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013709897.11e-130chromatin accessibility complex protein 1 isoform X4
RefseqXP_013709898.11e-130chromatin accessibility complex protein 1 isoform X5
TrEMBLA0A078E1301e-129A0A078E130_BRANA; Transcription factor subunit NF-YC10B
STRINGBo5g008650.12e-97(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111902231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.13e-63nuclear factor Y, subunit C10
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]