PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00101203001

Common Name

GSBRNA2T00101203001, LOC106435648

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 264aa MW: 28218.5 Da PI: 6.7654

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00101203001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.1	8.8e-05	152	191	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +r+ ++++ L++l+ + +K + a++L +A+ YIk Lq GSBRNA2T00101203001 152 VRKERLGERIAALQQLVSPY-----GKTDAASVLHEAMGYIKFLQ 191 67788999*******999.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.947	141	190	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.49E-11	147	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.00E-4	150	195	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.9E-7	151	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MGDSREDQED RAMVETGVSS FSELLMLSGG VLSSSDHHLN DIGADGGEDS FGFVFSGSTG 60 SRMLCFSGDC QNDDESLFLQ PSLLSGVSVS DPSCTTNICK NSNDACADNK STKSSTKKRI 120 GSVNRQTMDH NRKPSKKCKQ NQEKSSVGTA KVRKERLGER IAALQQLVSP YGKTDAASVL 180 HEAMGYIKFL QDQIQVLCSP YLINYSLDGG VVTGDVRAGK KVRDLRSRGL CLVPVSSTVL 240 LESSNGADFW SPATMGHTTS SSH*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.9197	0.0	seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00101203001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013732010.1	0.0	transcription factor bHLH113 isoform X1
Swissprot	Q9LT67	1e-142	BH113_ARATH; Transcription factor bHLH113
TrEMBL	A0A0D3ACB1	0.0	A0A0D3ACB1_BRAOL; Uncharacterized protein
STRING	Bo1g114650.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7402	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	1e-125	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	106435648

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]