PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00101227001
Common NameGSBRNA2T00101227001, LOC106374659
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 363aa    MW: 40326.1 Da    PI: 8.0474
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00101227001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.6e-0782107127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          ykt+ C  f + GtC  Gd C+FaHg+
  GSBRNA2T00101227001  82 YKTRMCAKFKA-GTCMNGDPCNFAHGM 107
                          9**********.*************95 PP
2zf-CCCH17.19.8e-061721861125
                          GTS.--TTTTT-SS-S CS
              zf-CCCH  11 rtG.tCkyGdrCkFaH 25 
                            G +C+yGdrC+F H
  GSBRNA2T00101227001 172 F-GeECPYGDRCNFVH 186
                          5.449*********** PP
3zf-CCCH361.2e-11249274127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                          +kt++C+ f   G+C++Gd+C+FaHg+
  GSBRNA2T00101227001 249 WKTRICMKFEN-GQCPFGDNCHFAHGQ 274
                          8**********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.109.2E-1579114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-880112IPR000571Zinc finger, CCCH-type
SMARTSM003560.005181107IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.06181108IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6161187IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.779161189IPR000571Zinc finger, CCCH-type
SMARTSM003560.018161188IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-7163187IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-9244278IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-14245277IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.882248275IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-7248274IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-9249274IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MDSSYSDSRP MFVQSPWNQT HTNDSMPYPM NNEQSESQSQ PSLKRPRLHD DTVFTPTSNN  60
SSWMAPPSNT PPMNKGTANI FYKTRMCAKF KAGTCMNGDP CNFAHGMEDL RQPPSNWQEI  120
VGPPPPAVQD RARERERERE RERPSSSSVS ASNWEDDQKI ILRMKLCRKF CFGEECPYGD  180
RCNFVHQDLS KFRDESGKLR ESLAISVGTN PASVENGGGT GSHQVEVNRR GGIPVPASLN  240
NGVVKTVYWK TRICMKFENG QCPFGDNCHF AHGQAELLYY SGEAVNAAAS LSKQTVVPGN  300
EAFAMKPSAA QVVTADSSGL NDEGRRKKCL LKWSDSKKIN RIYGDWIDDL PVGQKSTKPV  360
ES*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132142RERERERERER
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00101227001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013670086.10.0zinc finger CCCH domain-containing protein 39
SwissprotQ9LT811e-180C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A0D3ACC30.0A0A0D3ACC3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6G3E60.0A0A3P6G3E6_BRAOL; Uncharacterized protein
STRINGBo1g114770.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100662536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-174C3H family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]