PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00101423001
Common NameGSBRNA2T00101423001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 265aa    MW: 30449.1 Da    PI: 4.6328
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00101423001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.92.4e-10281101299
                          HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                          ++++ ++p +f+++ g+       ++l  ++++sW+  l  ++ +++ ++ ++ W eFv++n L++ D+++F++++++ f   v++f+k
  GSBRNA2T00101423001  28 SKSMRIFPEEFVRSAGEA--FVHRVVLSVLWNNSWQCWL--QQEKNGlFMVEEDWDEFVDDNLLDTDDTLLFTHQDTMYF--QVRIFKK 110
                          345568899***999744..5557***************..666666699***********************9887888..9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.08E-1411111IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-1312112IPR015300DNA-binding pseudobarrel domain
SMARTSM010199.5E-1016111IPR003340B3 DNA binding domain
PROSITE profilePS5086310.88417111IPR003340B3 DNA binding domain
PfamPF023626.5E-828110IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-7163248IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.6E-6164251IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508636.386227264IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MLPESENREN LSNPSFIKSL SIGQNWKSKS MRIFPEEFVR SAGEAFVHRV VLSVLWNNSW  60
QCWLQQEKNG LFMVEEDWDE FVDDNLLDTD DTLLFTHQDT MYFQVRIFKK DGNEITSVPL  120
EGEPETQPFH QETTPAYASA NGGTSSRARK GYAHVENPKR YLLNPRNPYF EKTLTKTNIV  180
LYVNTWVIEE YDLEFSPPNT HMYFLLPDGE KLDGYTKDYG GSHSFLGWAA VCERCNLRTG  240
DTVVCELELS GRVVSAVRVH LLDE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00101423001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013731520.20.0B3 domain-containing protein At5g25470-like
RefseqXP_022550921.10.0B3 domain-containing protein At5g25470-like
SwissprotQ680D91e-96Y5475_ARATH; B3 domain-containing protein At5g25475
TrEMBLA0A3P6G3Z60.0A0A3P6G3Z6_BRAOL; Uncharacterized protein
STRINGBra021284.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44911645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25475.35e-89B3 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]