PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00101508001
Common NameGSBRNA2T00101508001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 275aa    MW: 31287.7 Da    PI: 7.5261
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00101508001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.7e-05165187123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC+ Cgk+F++   L  H  +H
  GSBRNA2T00101508001 165 FKCETCGKVFNSYQALGGHRASH 187
                          89**********99999998887 PP
2zf-C2H212.80.00035213235123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++Cp+C ++F++   L  H r+H
  GSBRNA2T00101508001 213 HQCPICFRVFTSGQALGGHKRSH 235
                          79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.59E-9326No hitNo description
PfamPF139120.001327IPR007087Zinc finger, C2H2
SMARTSM003550.067426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.596431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576671.59E-9160187No hitNo description
PfamPF139128.5E-12164189IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.5E-4165193IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.739165192IPR007087Zinc finger, C2H2
SMARTSM003550.015165187IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280167187IPR007087Zinc finger, C2H2
SuperFamilySSF576674.67E-5210238No hitNo description
PfamPF139121.6E-10212235IPR007087Zinc finger, C2H2
PROSITE profilePS501579.369213240IPR007087Zinc finger, C2H2
SMARTSM003550.08213235IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280215235IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MERYKCRFCF KSFLNGRALG GHMRSHMLTL PSKRELYELT ERPSQLSEET ESDASSSSDE  60
EEEEDHANWG EFESETESSR MNPTRKRTKR TRKLGSFDFD DFKKVRTSQP GCEVGTEPEH  120
HSSEASDTTT EEDLALCLIM LSRDKWKQQK NKTIVNRGGR GRGRFKCETC GKVFNSYQAL  180
GGHRASHKKN KTFTTMTTST KTEHEKIECE KVHQCPICFR VFTSGQALGG HKRSHGSNNV  240
GSRRELSVNQ STMIDLNLPA PNEDDETSVV FNEW*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00101508001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893991e-121AC189399.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB056I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626096.11e-163PREDICTED: zinc finger protein ZAT4-like
RefseqXP_013626097.11e-163PREDICTED: zinc finger protein ZAT4-like
SwissprotQ9SHD01e-102ZAT4_ARATH; Zinc finger protein ZAT4
TrEMBLA0A0D3B6T11e-161A0A0D3B6T1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6AXK31e-161A0A3P6AXK3_BRAOL; Uncharacterized protein
STRINGBo3g037560.11e-162(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.19e-93C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]