PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00101513001
Common NameGSBRNA2T00101513001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 555aa    MW: 61068.9 Da    PI: 5.8647
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00101513001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS303.64.7e-931995533374
                 GRAS   3 elLlecAeavss.gdle.laqalLarlsel..aspdgd..pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                           +Ll++Ae +++ gd++ laq +Larl+++  +s++ +  p+qR+a+++ eAL + +++       a pp   +++n + ++aa+++fse
  GSBRNA2T00101513001 199 GQLLNAAELIATtGDHTiLAQGILARLNHHlsSSSYNNkaPFQRAAFHISEALLSLIHD-------AAPP-LLTPENLILRIAAYRTFSE 280
                          6899****99986555559**********97533333245******************9.......4444.444589************* PP

                 GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgv 174
                          +sP+l+f ++taNq Ile   g er+HiiDfd+++G+QW +L+q+La ++++   l++T++++p s+  ++ el+ t+e+L++fA el++
  GSBRNA2T00101513001 281 TSPFLQFVNFTANQSILEL--GFERIHIIDFDVGYGGQWSSLMQELARKRGS--CLKVTVFAPPPSTvsDEFELRFTEENLRSFAGELKI 366
                          ******************7..99************************98777..9********9988899******************** PP

                 GRAS 175 pfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                          pfe ++l  + l +  ++ L++++  +Ea+aVnl ++             + + +L+++k++sP+vvv++++ +d+n+++F + +++al+
  GSBRNA2T00101513001 367 PFEMELLSLELLLNPAYWPLSLRSsqKEAVAVNLPVSSVVSG--------YLPLILRFLKQISPNVVVCSDRGCDRNDAPFPNAVIHALQ 448
                          ******98888888899999887777*********9655554........5677************************************ PP

                 GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352
                          y+++l++sl+a+   +s+e+++vEr++++++i++++ +++++     e+   Wr+ ++++GF+p++ls++a++qa++l+++ +++g++ve
  GSBRNA2T00101513001 449 YHTTLLESLDAN---QSQEDSSVERFWVRPSIEKLLVKRHRW----IERSPPWRSLFTQCGFTPASLSQTAETQAECLMQRNPVRGFHVE 531
                          ************...8**************************....89999*************************************** PP

                 GRAS 353 eesgslvlgWkdrpLvsvSaWr 374
                          +++ slv++W++++Lv+vSaW+
  GSBRNA2T00101513001 532 KRQSSLVMCWQRKELVTVSAWK 553
                          *********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.063172533IPR005202Transcription factor GRAS
PfamPF035141.6E-90199553IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MPLSFERFQG EGVFSVSSFY SDSHKIRFNQ DKTGIEEERE DLGYVFRGGL QEPTSVLDAL  60
RSPSPLASHS STTTNTTLSS PHGGGAVTAT ATTTAGDDKC SQIGLDDLDG VISPDQEQSI  120
LRLIMDPGSG FGVLDPGFGF GSGSAPVSDG SNPLLSCGFP FNEQTHQIPN QESLFSNPPS  180
SPPTKRFNSG SHQPSVIIGQ LLNAAELIAT TGDHTILAQG ILARLNHHLS SSSYNNKAPF  240
QRAAFHISEA LLSLIHDAAP PLLTPENLIL RIAAYRTFSE TSPFLQFVNF TANQSILELG  300
FERIHIIDFD VGYGGQWSSL MQELARKRGS CLKVTVFAPP PSTVSDEFEL RFTEENLRSF  360
AGELKIPFEM ELLSLELLLN PAYWPLSLRS SQKEAVAVNL PVSSVVSGYL PLILRFLKQI  420
SPNVVVCSDR GCDRNDAPFP NAVIHALQYH TTLLESLDAN QSQEDSSVER FWVRPSIEKL  480
LVKRHRWIER SPPWRSLFTQ CGFTPASLSQ TAETQAECLM QRNPVRGFHV EKRQSSLVMC  540
WQRKELVTVS AWKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-2823955339375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.244080.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, cotyledons, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00101513001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893990.0AC189399.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB056I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013630167.10.0PREDICTED: scarecrow-like protein 27
SwissprotQ7XJM80.0SCL27_ARATH; Scarecrow-like protein 27
TrEMBLA0A3P6B2530.0A0A3P6B253_BRAOL; Uncharacterized protein
STRINGBo3g037600.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134171828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45160.10.0GRAS family protein
Publications ? help Back to Top
  1. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  4. Takanashi H, et al.
    miRNAs control HAM1 functions at the single-cell-layer level and are essential for normal embryogenesis in Arabidopsis.
    Plant Mol. Biol., 2018. 96(6): p. 627-640
    [PMID:29574557]