PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00101573001

Common Name

GSBRNA2T00101573001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 301aa MW: 32638.3 Da PI: 10.1173

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00101573001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	71.9	9.6e-23	187	248	1	62
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 e+elkrerrkq+NRe+A+rsR+RK+ae+eeL++kv++L+aeN+aL++el++l+++++kl+ GSBRNA2T00101573001 187 ERELKRERRKQSNRESAKRSRLRKQAETEELARKVEALTAENMALRSELNQLNEKSDKLRGA 248 89*******************************************************99865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07777	2.0E-7	1	32	IPR012900	G-box binding protein, multifunctional mosaic region
Pfam	PF16596	1.4E-9	65	132	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.3E-18	180	247	No hit	No description
Pfam	PF00170	2.5E-21	187	249	IPR004827	Basic-leucine zipper domain
SMART	SM00338	4.8E-21	187	251	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	13.311	189	252	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.13E-10	190	246	No hit	No description
CDD	cd14702	2.89E-20	192	243	No hit	No description
PROSITE pattern	PS00036	0	194	209	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MWNSQHMMSP YGTPYAAVYP HGGGVSAHPG FPMRSQPQVQ KGPPLTTPGT PLNMDTPTKS 60 TGNTDNGLMK KLKEFDGLAM SLGTAADERK RSWNSSETEG STNGSDVNTT GADEPKLKRN 120 REGTPTKDEK RYLVLSCSFR SVSPSSGDDG VKPVQRAIVS PGVSANSNSF MSQSLAMVQP 180 ETWLQNEREL KRERRKQSNR ESAKRSRLRK QAETEELARK VEALTAENMA LRSELNQLNE 240 KSDKLRGANA ALLNNLKSSE PEKSVFGNKN SGSGCNESNS SSKLHQLLDT KPRADAVAAG 300 *

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Present only in dark grown leaves and roots. {ECO:0000269\|PubMed:8672884}.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269\|PubMed:8672884}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00101573001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF370307	0.0	AF370307.1 Arabidopsis thaliana putative G-box binding bZIP transcription factor (At2g46270) mRNA, complete cds.
GenBank	AY063093	0.0	AY063093.1 Arabidopsis thaliana putative G-box binding bZIP transcription factor (At2g46270) mRNA, complete cds.
GenBank	X63896	0.0	X63896.1 A.thaliana mRNA GBF3 for G-box binding factor 3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013725821.1	0.0	G-box-binding factor 3-like
Refseq	XP_022553254.1	0.0	G-box-binding factor 3-like
Swissprot	P42776	1e-160	GBF3_ARATH; G-box-binding factor 3
TrEMBL	A0A3P6ADQ0	0.0	A0A3P6ADQ0_BRAOL; Uncharacterized protein (Fragment)
STRING	XP_006397815.1	1e-162	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3571	26	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46270.1	1e-141	G-box binding factor 3

Publications ? help Back to Top
Obayashi T, et al. ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis. Nucleic Acids Res., 2007. 35(Database issue): p. D863-9 [PMID:17130150] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Ramegowda V, et al. GBF3 transcription factor imparts drought tolerance in Arabidopsis thaliana. Sci Rep, 2017. 7(1): p. 9148 [PMID:28831141]