PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00101780001

Common Name

GSBRNA2T00101780001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 227aa MW: 26122.2 Da PI: 5.1656

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00101780001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.2	4.5e-55	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtdeelv++yLk+k+ g+++el ++i+evd+yk+ePwdL k + +++ ewyfF +rd+ky++g r+nrat+ gyWk+tgk GSBRNA2T00101780001 6 LPPGFRFHPTDEELVNYYLKRKICGQEIEL-DIIPEVDLYKCEPWDLAeKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRGGYWKSTGK 94 79**************************.99**********84335556888**************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 d++v+s +++++g+kktLv+y+grap+g +tdWvmheyrl GSBRNA2T00101780001 95 DRRVTS-QSRAIGMKKTLVYYRGRAPQGIRTDWVMHEYRL 133 **.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-65	4	157	IPR003441	NAC domain
PROSITE profile	PS51005	60.647	6	156	IPR003441	NAC domain
Pfam	PF02365	4.0E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MAPVGLPPGF RFHPTDEELV NYYLKRKICG QEIELDIIPE VDLYKCEPWD LAEKSFLPSR 60 DPEWYFFGPR DRKYPNGFRT NRATRGGYWK STGKDRRVTS QSRAIGMKKT LVYYRGRAPQ 120 GIRTDWVMHE YRLDDKDCDD PSSLQDSYAL CRVFKKNGIC SELETEPQLQ TGQCSFTTVS 180 MEMNSNNINY NNIVDDKDDS WMQFITDDAW DSSSNAAAMG HGQGVY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-56	2	157	11	169	Stress-induced transcription factor NAC1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in a few sieve element cells before enucleation and in phloem-pole pericycle cells. {ECO:0000269\|PubMed:25081480}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00101780001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF738271	0.0	KF738271.1 Brassica napus NAC transcription factor 57 (NAC57.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001302582.1	1e-167	NAC domain-containing protein 86-like
Refseq	XP_013719066.1	1e-167	NAC domain-containing protein 86-like
Refseq	XP_013749471.1	1e-167	NAC domain-containing protein 86-like isoform X1
Swissprot	Q9FFI5	4e-89	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A0A7DN84	1e-165	A0A0A7DN84_BRANA; NAC transcription factor 57
TrEMBL	A0A3P6FKD2	1e-165	A0A3P6FKD2_BRAOL; Uncharacterized protein
STRING	Bo5g122710.1	1e-165	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8504	28	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	1e-144	NAC domain containing protein 57

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]