PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00101926001

Common Name

GSBRNA2T00101926001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 332aa MW: 37499.3 Da PI: 7.5943

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00101926001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.7	4.8e-32	28	82	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt+eLH+rF+eav+qLGG++kAtPk ++++m+++gLtl+h+kSHLQkYRl GSBRNA2T00101926001 28 KPRLKWTCELHHRFIEAVNQLGGPNKATPKGLMKAMEIPGLTLYHLKSHLQKYRL 82 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.2E-28	26	82	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.33E-15	27	82	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.8E-22	28	83	IPR006447	Myb domain, plants
Pfam	PF00249	2.9E-6	30	81	IPR001005	SANT/Myb domain
Pfam	PF14379	1.0E-22	129	175	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MCLLMESNTT NGNNQKTKMS LVLSTDAKPR LKWTCELHHR FIEAVNQLGG PNKATPKGLM 60 KAMEIPGLTL YHLKSHLQKY RLGKSLKFDD NNLEDSSASE TQEAESKNVS TDFRGSVNVE 120 NNNPANEGVQ ITEALQLQME VQKKLHEQIE VQRHLQVKIE AQGKYLQSVL LKAQHTLAGY 180 TSSTLGMDFA RTELSRLASM VNQSSSFSEL TQVEEYKEEG FLWCKKQENR GTTHPRRSVE 240 SSLTSSESSE TNLNKNNDER MSVELPLMEI KSEKLTEKKK RSLNDVVCME RQPPKKRNLG 300 AYDDDDEHLR LSLNSYKKDM GTCPNIGLGF N*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-19	27	84	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-19	27	84	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-19	27	84	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-19	27	84	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-19	27	84	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-19	27	84	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-19	27	84	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-19	27	84	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.26684	1e-156	leaf\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00101926001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189353	0.0	AC189353.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043L15, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009105513.1	0.0	PREDICTED: myb family transcription factor PHL8-like isoform X2
Swissprot	F4I274	1e-163	PHL8_ARATH; Myb family transcription factor PHL8
TrEMBL	M4CJL3	0.0	M4CJL3_BRARP; Uncharacterized protein
STRING	Bra004397.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3878	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69580.1	1e-163	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]