PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00101931001
Common NameGSBRNA2T00101931001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 321aa    MW: 37028.9 Da    PI: 8.7252
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00101931001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.2e-16103148147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg W + Ed +l+++v+ +G+ +W++Ia++++ gR++k+c++rw++ 
  GSBRNA2T00101931001 103 RGHWRPAEDAKLKELVAVYGPQNWNLIAEKLQ-GRSGKSCRLRWFNQ 148
                          899*****************************.***********996 PP
2Myb_DNA-binding59.76.5e-19155199147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          r ++T+eE+e+l +a++++G++ W+ Iar ++ gRt++++k++w+ +
  GSBRNA2T00101931001 155 RRAFTEEEEERLMQAHNLYGNK-WAMIARLFP-GRTDNSVKNHWHVV 199
                          678*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.06998149IPR017930Myb domain
SuperFamilySSF466892.47E-29101196IPR009057Homeodomain-like
SMARTSM007175.0E-14102151IPR001005SANT/Myb domain
PfamPF002495.7E-16103148IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-27104156IPR009057Homeodomain-like
CDDcd001671.28E-12106147No hitNo description
PROSITE profilePS5129426.923150204IPR017930Myb domain
SMARTSM007172.4E-15154202IPR001005SANT/Myb domain
PfamPF002491.1E-15155198IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-21157203IPR009057Homeodomain-like
CDDcd001678.41E-12157200No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGMEIAYTNV SFPSITLHFP SSSHPLTINN NIVMSKDHHR WMDQIAYFSL NVNSDQHKGH  60
YYHASHGEEE MKNPNRCNCS TSSKKEMRDC GSCRHSLKAS VSRGHWRPAE DAKLKELVAV  120
YGPQNWNLIA EKLQGRSGKS CRLRWFNQLD PRINRRAFTE EEEERLMQAH NLYGNKWAMI  180
ARLFPGRTDN SVKNHWHVVM ARKFREQSSV YPRRKTMITH KPLANPNPHS CNDFEPTRSD  240
LIHLVSNDQS HLMLPIPCFS GYDHGMLENQ MMIDDYSSRT RVVATTFGDS NQTGKCEMLD  300
ESMNEKKKPH FFDFLGLGTV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-321012045108B-MYB
1h88_C9e-329220443159MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-329220443159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in organ boundaries. {ECO:0000269|PubMed:19542355}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00101931001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893530.0AC189353.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB043L15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013652333.20.0transcription factor MYB105-like
SwissprotQ9SEZ41e-144MY105_ARATH; Transcription factor MYB105
TrEMBLM4CJL00.0M4CJL0_BRARP; Uncharacterized protein
STRINGBra004394.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12102896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-147myb domain protein 105
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]