PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00101994001
Common NameGSBRNA2T00101994001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 480aa    MW: 51709.8 Da    PI: 5.0067
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00101994001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.46e-09302350355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  GSBRNA2T00101994001 302 NSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 350
                          58*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.56E-11297354No hitNo description
SuperFamilySSF474592.49E-17297368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.478299349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-17300367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-6302350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-10305355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MDVSEKDELR NGDDTTVNYD ESANNPPPDW RVSGSNPVSD SYPTENLMME TLWYDPANVQ  60
AVGYGGFNGG GNASSSSSFR GNIDRSLEMG WSLPNLLPPK GGNGMFLPNA GSFLPPSMAQ  120
FPADSGFIER AARFSLFSGG SFSDMMNQQQ PLGNPESVGL FLQGQCPSSE VNVVGVAHND  180
ASAGMKETNV RSSEQGNKQN VSEDTQSSGG NDQKGGETSS KGFDSKKRKR NKQNAEADQS  240
QRSQQSEEEP DNNGGGDKKR NDEQSPNSQG NKTNSGKQQG KQASDPKDGY IHVRARRGQA  300
TNSHSLAERV RREKISERMK FLQDLVPGCN KVTGKAVMLD EIINYVQSLQ RQVEFLSMKL  360
ATVNPQMDFS LEGLLAKDAL QLRAGTSSAT PFPPNMPMVY PPLPHGFMQQ TLSSMGRNVS  420
SPLSPPINGG YKRQEANGWE GDLQNVIQIN YGAGDAPHDS QAAAATEASL PSSNMKVEP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225232KKRKRNKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00101994001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105442.10.0PREDICTED: transcription factor bHLH49
RefseqXP_009105443.10.0PREDICTED: transcription factor bHLH49
RefseqXP_013649346.10.0transcription factor bHLH49-like
RefseqXP_022544844.10.0transcription factor bHLH49-like
SwissprotQ9CAA90.0BH049_ARATH; Transcription factor bHLH49
TrEMBLA0A3P6BH390.0A0A3P6BH39_BRACM; Uncharacterized protein
STRINGBra004348.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59002544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.30.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]