PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00102041001
Common NameGSBRNA2T00102041001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 305aa    MW: 33691.5 Da    PI: 4.6545
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00102041001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.21.2e-14110157253
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                          +  GVr++k +g+W+AeIr+p     +  r +lg+f t+e A++a+   rk++
  GSBRNA2T00102041001 110 KPVGVRQRK-WGKWAAEIRHPI----TkNRTWLGTFETEEAAHQAYKDKRKEY 157
                          789*****9.**********73....359*********99*******999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381232.4E-405269IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000189.62E-18109150No hitNo description
PfamPF008475.8E-9110158IPR001471AP2/ERF domain
PROSITE profilePS5103216.779110167IPR001471AP2/ERF domain
SMARTSM003801.8E-12110170IPR001471AP2/ERF domain
PRINTSPR003671.2E-5111122IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-14112162IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.2E-18113152IPR001471AP2/ERF domain
PRINTSPR003671.2E-5133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MVGIRKQLCL SSLSDTKKPK RSNPQETQQQ PLRKVRILVN DPYATDDSSS DEGETKMRRI  60
VRVVNFPPLL ESAPPPSVEP TSVSSSEDST KTISKKAAAA AASRPRLSKK PVGVRQRKWG  120
KWAAEIRHPI TKNRTWLGTF ETEEAAHQAY KDKRKEYDAL LATSNDSASV SETSQCSRSS  180
PLEQDTSASP PALKEEIKIA TTTAGVDSSS KEVLFGFNFA ELPIPDLGFF AEEGQMGDLG  240
FFTEEHDQLN LDCLFTDDQF DDFTMLGFED SGPSELPDWD FPDAEFDSSF FFADQHIPLK  300
SLAA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.119390.0seed
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00102041001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105398.10.0PREDICTED: ethylene-responsive transcription factor ERF118
RefseqXP_009105399.10.0PREDICTED: ethylene-responsive transcription factor ERF118
SwissprotQ9CA271e-82EF118_ARATH; Ethylene-responsive transcription factor ERF118
TrEMBLM4CJD40.0M4CJD4_BRARP; Uncharacterized protein
STRINGBra004318.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25372671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.27e-72ERF family protein
Publications ? help Back to Top
  1. Tran MK,Schultz CJ,Baumann U
    Conserved upstream open reading frames in higher plants.
    BMC Genomics, 2008. 9: p. 361
    [PMID:18667093]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]