PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00102044001
Common NameGSBRNA2T00102044001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 238aa    MW: 25763.1 Da    PI: 7.9116
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00102044001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26092.93.8e-294102194
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C++dC+++p++     +++q++++ +++k++G++ +l+l+++ p++ r+++++sl+yeA+ r+ +Pv G+vg+++++++
  GSBRNA2T00102044001   4 SCNGCRVLRKGCNQDCTIRPCLqwiksADSQANATLFLAKFYGRAGLLNLIESGPDHLRPAIFRSLLYEACGRIVNPVDGSVGLMWSGNW 93 
                          6*********************9999767889********************************************************** PP

               DUF260  86 qleqlkael 94 
                            +q+++++
  GSBRNA2T00102044001  94 AQCQAAVDA 102
                          ****99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.7563109IPR004883Lateral organ boundaries, LOB
PfamPF031954.9E-234101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MRISCNGCRV LRKGCNQDCT IRPCLQWIKS ADSQANATLF LAKFYGRAGL LNLIESGPDH  60
LRPAIFRSLL YEACGRIVNP VDGSVGLMWS GNWAQCQAAV DAILNGLPIT HTPLPSASSS  120
HQIIPPHRTY DIRHVAKDPT TGGDSSESLA LAPRVNGNKA KTQTGRLKRL AETVDYQLGE  180
CSHDTWQLQC SGATHGYGQL ALKNVANRRE DPLNQSSNLG CDDQVDTNEV GLELRLG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.14961e-111seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00102044001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105395.11e-177PREDICTED: LOB domain-containing protein 42
SwissprotQ9CA301e-150LBD42_ARATH; LOB domain-containing protein 42
TrEMBLM4CJD11e-175M4CJD1_BRARP; Uncharacterized protein
STRINGBra004315.1-P1e-176(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84632639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.11e-153LOB domain-containing protein 42
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]