PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00102056001

Common Name

GSBRNA2T00102056001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

ARR-B

Protein Properties

Length: 285aa MW: 32669.6 Da PI: 10.2048

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00102056001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	50.1	6.1e-16	187	236	5	55
G2-like 5 rWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 Wt+e H +F++a+++L G e Pk+il +m+v+ Lt +v+ HLQ Y+ GSBRNA2T00102056001 187 LWTCENHLKFLSAISNL-GDEDSHPKSILSIMNVPNLTHREVARHLQSYKA 236 5**************.9999*************************85 PP
2	Response_reg	35.9	3.8e-13	23	131	1	111
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH.ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd.pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 +l++d + + l+ +l+++ y +v ++ ++ea+ +l++++ + l++ emp++d + + +++ +++ +p i+++++g+ + + GSBRNA2T00102056001 23 ILLIDHDTASIASLTPMLKQHSY-KVISVNVASEAVSMLEKQKdIVLVIANNEMPHIDSHSFYTSLLTKD--IPLILISSEGKRNKSSNS 109 899******************.99999999999999966666******************9977..************** PP HHTTESEEEESS--HHHHHHHH CS Response_reg 90 lkaGakdflsKpfdpeelvkav 111 l+ a fl+ p++++++ +++ GSBRNA2T00102056001 110 LEKRACYFLTRPIHEKDINNML 131 *************9998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00448	0.0011	21	131	IPR001789	Signal transduction response regulator, receiver domain
PROSITE profile	PS50110	22.146	22	135	IPR001789	Signal transduction response regulator, receiver domain
SuperFamily	SSF52172	3.7E-14	22	147	IPR011006	CheY-like superfamily
Pfam	PF00072	5.9E-10	23	131	IPR001789	Signal transduction response regulator, receiver domain
Gene3D	G3DSA:3.40.50.2300	2.5E-17	23	166	No hit	No description
CDD	cd00156	4.52E-9	24	135	No hit	No description
SuperFamily	SSF46689	2.51E-10	181	240	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.1E-15	186	241	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-13	187	237	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MAENFAFVLF GTKISKHNGD TPILLIDHDT ASIASLTPML KQHSYKVISV NVASEAVSML 60 EKQKDIVLVI ANNEMPHIDS HSFYTSLLTK DIPLILISSE GKRNKSSNSL EKRACYFLTR 120 PIHEKDINNM LQHVLPNKSQ KLEKISIPNN AEALLRINQM KAFRENLRRQ RTEVNNIESK 180 VRRRSNLWTC ENHLKFLSAI SNLGDEDSHP KSILSIMNVP NLTHREVARH LQSYKAKVDR 240 MNETLSRKEW IPTNKTFEYP SDYKYPFTLS NIAKNLFSGK NLIR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00102056001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189489	0.0	AC189489.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084K02, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018508543.1	0.0	PREDICTED: putative two-component response regulator-like APRR6
Swissprot	Q9C9F6	2e-84	APRR6_ARATH; Putative two-component response regulator-like APRR6
TrEMBL	A0A3P6B909	0.0	A0A3P6B909_BRACM; Uncharacterized protein
STRING	Bra004306.1-P	2e-97	(Brassica rapa)
STRING	Bo6g106810.1	2e-99	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13685	14	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68210.1	9e-87	pseudo-response regulator 6

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]