PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00102251001

Common Name

GSBRNA2T00102251001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 162aa MW: 18198.3 Da PI: 4.7647

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00102251001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	23.5	1.1e-07	114	134	30	52
RWP-RK 30 TvLKriCRqyGIkRWPhRkiksl 52 Tv K ++GI+RWPhRk+ksl GSBRNA2T00102251001 114 TVTKE--KELGINRWPHRKLKSL 134 55555..489***********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MDPNSVLPLD SLSIKNQDDP DSCFDMLKKL PPLDSLLYIE DPKPNAGFNS QFDSTSFEEF 60 SENIEGNNTI SSDTMLTEEL FFSSYSSSHV AAQNNDSVSS NERCQKRTLK KSNTVTKEKE 120 LGINRWPHRK LKSLNSLIGN LKGVGMEEEV KNLEEHRILI K*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00102251001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013620055.1	1e-77	PREDICTED: protein RKD4-like
Swissprot	Q9LVU8	7e-45	RKD4_ARATH; Protein RKD4
TrEMBL	A0A3P6CSE1	1e-106	A0A3P6CSE1_BRAOL; Uncharacterized protein
STRING	Bo2g046220.1	5e-74	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12585	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	3e-47	RWP-RK domain-containing protein

Publications ? help Back to Top
Azpeitia E,Davila-Velderrain J,Villarreal C,Alvarez-Buylla ER Gene regulatory network models for floral organ determination. Methods Mol. Biol., 2014. 1110: p. 441-69 [PMID:24395275] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]