PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00102426001
Common NameGSBRNA2T00102426001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 182aa    MW: 20445.3 Da    PI: 10.0851
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00102426001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox49.47.8e-1659971856
                         HHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox 18 lFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                          ++kn+++++++++eLA+ l+L++rqV vWFqNrRa+ k
  GSBRNA2T00102426001 59 SYKKNHTLTHKQKQELATFLKLSQRQVEVWFQNRRARSK 97
                         699**********************************98 PP
2HD-ZIP_I/II89.73.4e-29581311690
          HD-ZIP_I/II  16 esFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +s++++++L++++K+ela+ L+l++rqv+vWFqnrRAR k+k++E+++e+Lkr + +lke+n++L+keveeLr +
  GSBRNA2T00102426001  58 HSYKKNHTLTHKQKQELATFLKLSQRQVEVWFQNRRARSKLKHTEMECEYLKRLFGSLKEQNRQLQKEVEELR-A 131
                          58999*******************************************************************9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003892.3E-846103IPR001356Homeobox domain
CDDcd000867.33E-1158100No hitNo description
Gene3DG3DSA:1.10.10.601.6E-1358100IPR009057Homeodomain-like
SuperFamilySSF466893.42E-1359108IPR009057Homeodomain-like
PfamPF000464.1E-135997IPR001356Homeobox domain
PROSITE profilePS5007113.2816099IPR001356Homeobox domain
PROSITE patternPS0002707497IPR017970Homeobox, conserved site
SMARTSM003402.5E-1499142IPR003106Leucine zipper, homeobox-associated
PfamPF021831.6E-799133IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MAVSPNSSSL ELTISIPSFS PSPSLPSSGN HMVRDLDINQ TPKTKNDREW IMIGATPHSY  60
KKNHTLTHKQ KQELATFLKL SQRQVEVWFQ NRRARSKLKH TEMECEYLKR LFGSLKEQNR  120
QLQKEVEELR ALKPVSASVL TMCPRCERVT VAADNGSNAV EEGTALRSQS RMTISSSSTL  180
C*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00102426001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105759.11e-107PREDICTED: homeobox-leucine zipper protein ATHB-X
SwissprotQ8GXM71e-77ATHBX_ARATH; Homeobox-leucine zipper protein ATHB-X
TrEMBLA0A397YQU71e-105A0A397YQU7_BRACM; Uncharacterized protein
TrEMBLM4DI471e-105M4DI47_BRARP; Uncharacterized protein
STRINGBra016174.1-P1e-106(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133801624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70920.18e-78homeobox-leucine zipper protein 18
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]