PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00102536001

Common Name

GSBRNA2T00102536001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 326aa MW: 36303.6 Da PI: 6.1136

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00102536001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51.1	2.5e-16	126	177	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ +s++ + a+i+ A++Y+k+L+ GSBRNA2T00102536001 126 QRMTHIAVERNRRKQMNEYLAALRSLMPPC---YSQRGDQASIVGGAINYLKELE 177 79**************************...*****************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	9.11E-15	124	181	No hit	No description
PROSITE profile	PS50888	16.964	125	176	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.15E-19	125	189	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-13	126	177	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.3E-16	126	190	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-13	131	182	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MALEAVVYLQ DPLSYSSCKD FPFHDLYFQQ GEDQDPLDTK NNIKLGQEQR QGFGSINYNG 60 KGGDNSVDYS YNDQVDLQWP LHELPYGSTV DTKNHPPPSD MAATGGERKK RRRTRSNKNK 120 EEIENQRMTH IAVERNRRKQ MNEYLAALRS LMPPCYSQRG DQASIVGGAI NYLKELEHQL 180 QSMEPQVKTT ATKETGSTVG DKNNTITASS SGPFSDFFAF PQYSSRPSSS SVAEGTAEIE 240 VTMVESHASV KILAKKRPKQ LLKLVASIQS LRLTLLHLNV TTHDDSVLYS ISLKVEEGSQ 300 LNTVEDIAAA VNQILMRIEE ESPLS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	126	137	RMTHIAVERNRR

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00102536001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013649534.1	0.0	transcription factor bHLH96-like
Swissprot	Q9C7T4	1e-178	BH096_ARATH; Transcription factor bHLH96
TrEMBL	A0A397YYC9	0.0	A0A397YYC9_BRACM; Uncharacterized protein
STRING	Bra016080.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1116	27	102

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	1e-171	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]