PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00102559001
Common NameGSBRNA2T00102559001, LOC106357221
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 251aa    MW: 28310.6 Da    PI: 4.7171
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00102559001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.2e-1762112155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+G+r+++ +grW+AeIrdp     +  r++lg+f ta++Aa+a++  +k+l+g
  GSBRNA2T00102559001  62 SEYRGIRRRP-WGRWAAEIRDPI----KgVRVWLGTFNTAQDAARAYDFEAKRLRG 112
                          569*******.**********72....46*******************99999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.31E-2162121IPR016177DNA-binding domain
PfamPF008471.7E-1063112IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.2E-3063121IPR001471AP2/ERF domain
PROSITE profilePS5103223.57863120IPR001471AP2/ERF domain
SMARTSM003805.1E-3663126IPR001471AP2/ERF domain
PRINTSPR003677.1E-116475IPR001471AP2/ERF domain
CDDcd000184.21E-2964121No hitNo description
PRINTSPR003677.1E-1186102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MCGGAVISDY IAPGAGKPSW IRDDVVDLTL DDLEGDSQCY PWLGMKREDG RRKKKTNKSS  60
SSEYRGIRRR PWGRWAAEIR DPIKGVRVWL GTFNTAQDAA RAYDFEAKRL RGVKAKLNFP  120
NESPASSSRK RKASSPPPTQ RPQVRKIEEK REDVDVLGGG CFDFLWEENN NADASQVDTQ  180
WLEDVIIMGD DAEKRQKGYY DCEGNVDELL AFENETECFL QTPFMEGGNC GFSTSLTSLL  240
DEVNVMDLWF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2059120163ATERF1
3gcc_A2e-2059120163ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.231152e-72root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00102559001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895751e-69AC189575.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011C10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013652353.10.0ethylene-responsive transcription factor ERF073
SwissprotQ8H0T55e-69ERF73_ARATH; Ethylene-responsive transcription factor ERF073
TrEMBLM4DHT61e-149M4DHT6_BRARP; Uncharacterized protein
STRINGBra016063.1-P1e-150(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137371625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.22e-68ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Yang CY,Huang YC,Ou SL
    ERF73/HRE1 is involved in H2O2 production via hypoxia-inducible Rboh gene expression in hypoxia signaling.
    Protoplasma, 2017. 254(4): p. 1705-1714
    [PMID:27995331]