PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00102753001
Common NameGSBRNA2T00102753001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARF
Protein Properties Length: 320aa    MW: 36242.1 Da    PI: 6.8733
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00102753001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.97.5e-13991652083
                          HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3  20 kkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                           + +e +    +++++s  l+l d + ++W++kl ++   g+y+ ++ W +Fv+a++L++gD+vvF 
  GSBRNA2T00102753001  99 PHLTEMCfpaALVPPRSDILRLSDVERKEWQMKLVFDVETGEYTVGEEWASFVRAKDLRAGDTVVFV 165
                          4444444777888999999***********************************************7 PP
2Auxin_resp29.43.5e-11204277781
           Auxin_resp   7 tksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrs 81 
                          ++++ e +Y+P   +s+F v+ + ++++l v ++ GmR+k   e +d ++  + + t  g sd++     +S Wr+
  GSBRNA2T00102753001 204 QSKPVELTYSPMDPHSDFLVSPRVYRDSLLVVWMRGMRVKKVREYDDDHHVGTiTSTTFGNSDVHG--VMRSLWRC 277
                          6678899*************************************9998887665777777777555..789***98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100177.48E-1182164No hitNo description
PfamPF023623.3E-1094165IPR003340B3 DNA binding domain
SuperFamilySSF1019361.73E-10102170IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.5E-12102183IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.968118181IPR003340B3 DNA binding domain
PfamPF065074.1E-6204277IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MSRKPSDFEM VTGSPALGSA YYIPQGHAQY CNTSEDTVSV CRYMPPYLCN VAYKNCFGDN  60
TTDELFTTVC LSPCTTHQNN FTDHSPHGFF RLSKLLEPPH LTEMCFPAAL VPPRSDILRL  120
SDVERKEWQM KLVFDVETGE YTVGEEWASF VRAKDLRAGD TVVFVSVLGS AITLFATSRA  180
HSQSKVRHSI NLDAFSKAIG GLMQSKPVEL TYSPMDPHSD FLVSPRVYRD SLLVVWMRGM  240
RVKKVREYDD DHHVGTITST TFGNSDVHGV MRSLWRCHTV VWDAPYGFDR IHFSPWELTP  300
SQEQPQRQPQ PPRTLHLFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-132130042354Auxin response factor 1
4ldw_A1e-132130042354Auxin response factor 1
4ldw_B1e-132130042354Auxin response factor 1
4ldx_A1e-132130042354Auxin response factor 1
4ldx_B1e-132130042354Auxin response factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00102753001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892710.0AC189271.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB023L08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009110159.10.0PREDICTED: auxin response factor 9-like
TrEMBLM4DIR80.0M4DIR8_BRARP; Auxin response factor
STRINGBra016395.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2555833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.21e-16auxin response factor 9
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]