PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00102901001

Common Name

GSBRNA2T00102901001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 319aa MW: 35117.8 Da PI: 4.9623

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00102901001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.4	2.1e-10	65	106	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++T+eE++l+++ ++ +G++ W +Ia++++ g+t++++k w+ GSBRNA2T00102901001 65 SFTPEEEDLIIKMHAAMGSRLWPLIAQHLP-GKTEEEVKMVWN 106 79**************************.******8887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.15E-11	44	117	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.216	58	113	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.1E-15	62	113	IPR009057	Homeodomain-like
SMART	SM00717	1.5E-9	62	111	IPR001005	SANT/Myb domain
Pfam	PF00249	9.9E-10	65	107	IPR001005	SANT/Myb domain
CDD	cd00167	3.32E-9	65	109	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MVRSCSSKSK NPWTDEDNTS QKFAFASASA SSKNGSTPKK IGLRRCGKSC RVRKTDNAGA 60 AKHESFTPEE EDLIIKMHAA MGSRLWPLIA QHLPGKTEEE VKMVWNSKLK KKLSQMGIDH 120 VTHRPFSHVL AEYGNINGGG GGNLNPNPMN QTGSLGPNPS LNEDSHQQQQ QQSNDSGDLM 180 FHLQAIKLMT ESSNQVKPDS TFMYASSSSS NSSPPLFSST CSTIAQENSE VNFTWSDFLL 240 DQETFNENQQ NFPDQELDNL FGNEFSEAEA VATMANTSAP DAQMEEESLS NGFVESIIAK 300 EKELFLGFPS YLDQPFHF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.25315	1e-167	flower

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00102901001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013605421.1	0.0	PREDICTED: transcription factor MYB35 isoform X1
TrEMBL	A0A3P6FEI3	0.0	A0A3P6FEI3_BRAOL; Uncharacterized protein
STRING	Bo8g068210.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14822	15	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18960.1	1e-152	MYB_related family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]