PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00102919001
Common NameGSBRNA2T00102919001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 168aa    MW: 19375.2 Da    PI: 10.1153
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00102919001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569.3e-181461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g W +eEde+l+ +++++G+ +W++I+++ g+ R++k+c++rw++yl
  GSBRNA2T00102919001 14 KGEWIAEEDEKLIAYINEHGMCDWRSIPKRAGLQRCGKSCRLRWLNYL 61
                         799*******************************************97 PP
2Myb_DNA-binding582.2e-1867111147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg++T++E+e++++++  lG++ W++Ia++m  +Rt++++k++w++ 
  GSBRNA2T00102919001  67 RGKFTPQEEEKIIKVHGVLGNR-WAAIAKHME-NRTDNDIKNHWNSC 111
                          89********************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.402961IPR017930Myb domain
SuperFamilySSF466893.16E-2911108IPR009057Homeodomain-like
SMARTSM007174.8E-131363IPR001005SANT/Myb domain
PfamPF002497.4E-161461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-241568IPR009057Homeodomain-like
CDDcd001671.42E-101661No hitNo description
PROSITE profilePS5129426.92562116IPR017930Myb domain
SMARTSM007175.1E-1666114IPR001005SANT/Myb domain
PfamPF002497.4E-1767111IPR001005SANT/Myb domain
CDDcd001672.52E-1069109No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2569116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MGRKTWFNDD GMKKGEWIAE EDEKLIAYIN EHGMCDWRSI PKRAGLQRCG KSCRLRWLNY  60
LRPGIKRGKF TPQEEEKIIK VHGVLGNRWA AIAKHMENRT DNDIKNHWNS CLKKRLSRNG  120
IDPMTHKPVN NNLTVTTTYV ECGSSSTTTW PTRETIVPPH LPAWFVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-26121175109B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in trichomes, stems, carpels, petals and stamens. {ECO:0000269|PubMed:18805951}.
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00102919001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009110326.11e-112PREDICTED: transcription factor MYB34-like
RefseqXP_013655214.11e-112transcription factor MYB106-like
SwissprotQ9LE634e-59MY106_ARATH; Transcription factor MYB106
TrEMBLA0A397YE841e-110A0A397YE84_BRACM; Uncharacterized protein
TrEMBLM4DJ681e-110M4DJ68_BRARP; Uncharacterized protein
STRINGBra016546.1-P1e-111(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18710.19e-84myb domain protein 47
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]