PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00103117001
Common NameGSBRNA2T00103117001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 467aa    MW: 50434.9 Da    PI: 8.5495
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00103117001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1079.7e-34211267259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           DgynWrKYGqK+vkgsefprsYY+Ct + Cpvkkkvers  d++v+ei+Y+g+Hnhe
  GSBRNA2T00103117001 211 VDGYNWRKYGQKQVKGSEFPRSYYKCTNPACPVKKKVERSL-DGQVTEIIYKGQHNHE 267
                          59***************************************.***************8 PP
2WRKY104.84.7e-33364422159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK vkg+++prsYY+Ct++gC v+k+ver+a+dpk+v++tYeg+Hnh+
  GSBRNA2T00103117001 364 LDDGYRWRKYGQKIVKGNPYPRSYYKCTTQGCGVRKHVERAATDPKAVVTTYEGKHNHD 422
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.3E-29205269IPR003657WRKY domain
SuperFamilySSF1182905.75E-25210269IPR003657WRKY domain
SMARTSM007741.8E-36210268IPR003657WRKY domain
PfamPF031061.6E-25212267IPR003657WRKY domain
PROSITE profilePS5081123.571212269IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.3E-36350424IPR003657WRKY domain
SuperFamilySSF1182901.57E-29356424IPR003657WRKY domain
PROSITE profilePS5081137.952359424IPR003657WRKY domain
SMARTSM007749.5E-39364423IPR003657WRKY domain
PfamPF031064.3E-26365422IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MSEKAELPST SNSTGAPSRP TLSLPPRPFS ETFFNGGVGF SPGPMTLVSN MFSDSDESSR  60
SFSQLLAGVV MPSPATGSEG NSNSSSSSVD AVDSRFKQSR PTGLMVSQSP SVFTVPPGLS  120
PAMLLDSPSF LGLFSPLQGS YGMTHQQALA QVTAQAVQAN ANMQPPSSQV QSQNPTSAPD  180
SSQLAQRETT DTTIIEHNRS QQPLNVDKPA VDGYNWRKYG QKQVKGSEFP RSYYKCTNPA  240
CPVKKKVERS LDGQVTEIIY KGQHNHEPPQ NTKRGNKDSL HGSLINNNPN KTTREQHEAA  300
SQATTEQMSE ASDSEEVGNG DTCVRDEPDA KRRALEPAAA VAASHRTVAE PRIIVQTTSE  360
VDLLDDGYRW RKYGQKIVKG NPYPRSYYKC TTQGCGVRKH VERAATDPKA VVTTYEGKHN  420
HDPPAAKSSS HAAAAAAQLR HGGLVNLNQQ QQRPVACLRL KEEQTI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-44212425878Probable WRKY transcription factor 4
2lex_A7e-44212425878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00103117001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931590.0KM593159.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY87) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009110565.10.0PREDICTED: probable WRKY transcription factor 4
SwissprotQ9XI900.0WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A3P6BZI50.0A0A3P6BZI5_BRACM; Uncharacterized protein
STRINGBra016716.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15342792
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.10.0WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]