PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00103201001
Common NameGSBRNA2T00103201001, LOC106381091
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 139aa    MW: 15084.7 Da    PI: 6.1036
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00103201001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.84.1e-161362255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +ykG+r++k +g+Wv+eIr+p +   r r +lg+f tae+Aa a++ a  +l+ 
  GSBRNA2T00103201001 13 KYKGIRRRK-WGKWVSEIRVPGT---RERLWLGSFSTAEGAAVAHDVAFYCLHR 62
                         8*****998.**********943...5*********************999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.37E-241276No hitNo description
SMARTSM003806.4E-271380IPR001471AP2/ERF domain
PfamPF008475.1E-81360IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-241374IPR001471AP2/ERF domain
PROSITE profilePS5103220.8241374IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-161372IPR016177DNA-binding domain
PRINTSPR003674.6E-91425IPR001471AP2/ERF domain
PRINTSPR003674.6E-93652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MDPRDGGETH QAKYKGIRRR KWGKWVSEIR VPGTRERLWL GSFSTAEGAA VAHDVAFYCL  60
HRPSSLDNEA FNFPHLLQPS LASNTSPKSI QKAASDAGMG VDAGFALNND SASGGVEEGS  120
ERETLNISVY DYLDDGRI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1111751273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00103201001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0161622e-88AC016162.5 Arabidopsis thaliana chromosome 1 BAC F3I17 genomic sequence, complete sequence.
GenBankAC0161632e-88AC016163.6 Arabidopsis thaliana chromosome 1 BAC F26A9 genomic sequence, complete sequence.
GenBankBT0109992e-88BT010999.1 Arabidopsis thaliana At1g71520 gene, complete cds.
GenBankBT0148162e-88BT014816.1 Arabidopsis thaliana At1g71520 gene, complete cds.
GenBankCP0026842e-88CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022551127.11e-99ethylene-responsive transcription factor ERF020
SwissprotQ9C9I88e-74ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A0D3CZV81e-97A0A0D3CZV8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6G0B31e-97A0A3P6G0B3_BRAOL; Uncharacterized protein
STRINGBo6g113060.12e-98(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38652860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.13e-76ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]