PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00103287001
Common NameGSBRNA2T00103287001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 329aa    MW: 36499.7 Da    PI: 5.6713
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00103287001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.71.6e-16126177155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r++h ++Er+RR+++N+ ++ Lr+l+P++   +s++ + a+i+  A++Y+k+Lq
  GSBRNA2T00103287001 126 QRMTHIAVERNRRKQMNEYLAVLRSLMPPC---YSQRGDQASIVGGAINYLKELQ 177
                          79****************************...*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.99E-16124181No hitNo description
Gene3DG3DSA:4.10.280.109.2E-16124181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.761125176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-19125188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-13126177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-14131182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MALEAVVYLQ DPLSYSSCKD FPFQDLYFQQ GEDQDPLDTK NNIKLGQEQR QGFGSINYNG  60
KGGDNSVDYS YNDQVDLQWP PHELPYGSTV DTRNHPPPSD MAATGGERRK RRRTRSNKNK  120
EEIENQRMTH IAVERNRRKQ MNEYLAVLRS LMPPCYSQRG DQASIVGGAI NYLKELQHQL  180
QSMEPPVKIT ATEDTGATAA SAGDQNNTIS ASSSGPFSDF FAFPQYSSRP SSSSVAEGTA  240
EIEVTMVESH ASVKILAKKR PKQLLKLVAS IQSLRLTLLH LNVTTHDNSV LYSISLKVEE  300
GSQLNTVEDI AAAVNQILMR IEEESPLS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108112RKRRR
2108113RKRRRT
3126137RMTHIAVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00103287001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013588246.10.0PREDICTED: transcription factor bHLH96-like
RefseqXP_013672411.10.0transcription factor bHLH96-like
RefseqXP_013684773.10.0transcription factor bHLH96-like
SwissprotQ9C7T40.0BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0D3D0260.0A0A0D3D026_BRAOL; Uncharacterized protein
TrEMBLA0A3N6Q0000.0A0A3N6Q000_BRACR; Uncharacterized protein
TrEMBLA0A3P6GFE10.0A0A3P6GFE1_BRAOL; Uncharacterized protein
STRINGBo6g114730.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-173bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]